DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and CDC48B

DIOPT Version :10

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_178463.1 Gene:CDC48B / 814895 AraportID:AT2G03670 Length:603 Species:Arabidopsis thaliana


Alignment Length:552 Identity:143/552 - (25%)
Similarity:222/552 - (40%) Gaps:148/552 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   324 EKQKEEAQSKPQKTREPMLAGMTNEPMK--LRVRSSG---------YGPKAT--TS---AQPTAS 372
            ||.:.||:....:.....|..:...|.:  |..|:.|         |||..|  ||   |.....
plant    16 EKWRAEAEIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQEC 80

  Fly   373 GRKLTIGSKRPVNLAVANKSQTLPRNLGSKTSVGAVQRQPA------------------------ 413
            ...|.:.|...|:.|.|.:|:.:.|...::.|..||..:|:                        
plant    81 DAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRDARREQDVRI 145

  Fly   414 ---------------------------KTAATPPAVRRQFSSGR-------NTPPQRSR------ 438
                                       :..|..||:||   :||       :||.:..|      
plant   146 ASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRR---AGRFDALVEVSTPNEEDRLKILQL 207

  Fly   439 ---------------TPINNNG--------------PSGSGASTPVVSVKGVEQKLVQLILDEIV 474
                           ..|:.||              .|.|..|:..:.:...:.|:.:.::...:
plant   208 YTKKVNLDPSVDLQAIAISCNGYVGADLEALCREATISASKRSSDSLILTSQDFKIAKSVVGPSI 272

  Fly   475 EGG-----AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLA 533
            ..|     .||.|.|:.|....|:.||:.|..|......|..:. :|.:|:||.||||..||.||
plant   273 NRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLA 337

  Fly   534 RAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSS 594
            :|.|....|:|.::|.|.|.|.|||:||.|:|..|..||...|||||.||.|.:..:|    ||:
plant   338 KAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSN 402

  Fly   595 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRE 657
            ......||.:..|.|.|||   .:...|:||||||||..:|.|.:|  ||...:||..||.:.|.
plant   403 SSTVGERLLSTLLTEMDGL---EEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARF 464

  Fly   658 LLL-----NRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDIS 717
            .:|     |..|   |..:|   ||::|:.||.::|::|..|.:::....:|| |:         
plant   465 EILQVHTRNMTL---GDDVD---LRKIAEETDLFTGAELEGLCRESGTVSLRE-NI--------- 513

  Fly   718 AMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 749
            |..|:..:.|.::...::.::..:.:.:|..:
plant   514 AATAVFNRHFQTAKSSLKPALTIEEVETYSSF 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
RecA-like_spastin 484..648 CDD:410932 70/170 (41%)
AAA_lid_3 676..727 CDD:465537 13/50 (26%)
Vps4_C <722..754 CDD:462762 2/28 (7%)
CDC48BNP_178463.1 CDC48 <23..551 CDD:273521 139/545 (26%)
Blue background indicates that the domain is not in the aligned region.

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