DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and Nsf2

DIOPT Version :10

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_788676.1 Gene:Nsf2 / 41694 FlyBaseID:FBgn0266464 Length:752 Species:Drosophila melanogaster


Alignment Length:429 Identity:118/429 - (27%)
Similarity:181/429 - (42%) Gaps:108/429 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   362 KATTSAQPTAS------------GRKLTIG--------SKRPVNLAVANKSQTLPRNLGSKTSVG 406
            |.||:.:|..|            |..||:|        .|:.:.|||.......||.:|...   
  Fly   110 KKTTTQEPYDSDEMAKEFLMQFAGMPLTVGQTLVFQFKDKKFLGLAVKTLEAVDPRTVGDSL--- 171

  Fly   407 AVQRQPAKTAATPPAVRRQFSSGR---NTPPQRSRTPINNNGPSGSGASTPVVSVKGVEQ-KLV- 466
                  .||        |....||   ||..|..:            |...|::::|..: |:| 
  Fly   172 ------PKT--------RNVRFGRILGNTVVQFEK------------AENSVLNLQGRSKGKIVR 210

  Fly   467 QLILDEIVEGGAKVEW----TDIAGQD-----VAKQALQEMVILPSVRPELFTGLRAPAKGLLLF 522
            |.|::.        :|    ..|.|.|     :.::|....|..|.:..:|  |:: ..||:||:
  Fly   211 QSIINP--------DWDFGKMGIGGLDKEFNAIFRRAFASRVFPPELVEQL--GIK-HVKGILLY 264

  Fly   523 GPPGNGKTLLARAVATECSATFLNI-SAASLTSKYVGDGEKLVRALFAVA----RHMQPS----I 578
            ||||.||||:||.:.|..:|....| :...:..||||:.|..:|.|||.|    :.:.|:    |
  Fly   265 GPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHI 329

  Fly   579 IFIDEVDSLLSER-----SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 638
            |..||:|::...|     :|..|:.   :..:.|.:.||:   ...:.|:|:..|||...:|||.
  Fly   330 IIFDEIDAICKARGSVAGNSGVHDT---VVNQLLAKIDGV---EQLNNILVIGMTNRRDMIDEAL 388

  Fly   639 LR--RFTKRVYVSLPDEQTRELLLN------RLLQKQGSPLDTEALRRLAKITDGYSGSDLTALA 695
            ||  |...::.:|||:||.|..:||      |...|..|.:|.   ..:|..|..:||::|..|.
  Fly   389 LRPGRLEVQMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDN---NEIAAKTKNFSGAELEGLV 450

  Fly   696 KDAALEPIRELNVEQVKC-LDISAMR--AITEQDFHSSL 731
            :.|....:..|.....|. :|..||.  .:|..||..:|
  Fly   451 RAAQSTAMNRLIKADSKVHVDPEAMEKLRVTRADFLHAL 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
RecA-like_spastin 484..648 CDD:410932 58/184 (32%)
AAA_lid_3 676..727 CDD:465537 13/53 (25%)
Vps4_C <722..754 CDD:462762 4/10 (40%)
Nsf2NP_788676.1 CDC48_N 9..89 CDD:215012
CDC48_2 117..>170 CDD:215011 13/52 (25%)
RecA-like_NSF-SEC18_r1-like 224..400 CDD:410912 58/184 (32%)
CDC48 <225..>611 CDD:273521 86/277 (31%)
Blue background indicates that the domain is not in the aligned region.

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