DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spas and smid

DIOPT Version :9

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster


Alignment Length:731 Identity:175/731 - (23%)
Similarity:283/731 - (38%) Gaps:167/731 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 QNSSKEQQQ------SLNHPSELNREGDGQEQQLSNQPQRFRPIQPLE---MAANRPGGGY---- 217
            ||.|:::.:      .:.||:|..|:..|.:..|....:....|:..|   .....|..|.    
  Fly   227 QNQSRDRLRKFKRDLEVQHPTESFRDIGGMDSTLKELCEMLIHIKSPEFYFQLGLLPSRGLLLHG 291

  Fly   218 SPGPGDPLLAK-------------------------QKHHHRRAFE----YISKALKIDEENE-- 251
            .||.|...||:                         .:...|..|:    |....|.|||.:.  
  Fly   292 PPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIG 356

  Fly   252 GHKELAIELYRKGI-------------KELEDGIAVDCWSGRGDVWD----RAQRLHDKMQTNLS 299
            |:::.|.:...:.|             .|....:.|...:.|.||.|    |..|...::..::.
  Fly   357 GNRQWASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIP 421

  Fly   300 MARDRLHFLAL---------------------------------REQDLQMQRLSLKEKQKEEAQ 331
            ..::|...|.:                                 |...:.::|.|:|:.::..|.
  Fly   422 SRKERREILRIQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAA 486

  Fly   332 SKPQKTR------EPML-AGMTNEPMKLRVRSSGYGPKATTSAQPTASGRKLTIGSKRPVNLAVA 389
            |:...|.      ||.. ||.|..|     .|.|........|:....|.|.|  |.:..:...:
  Fly   487 SEKNMTTVTLDDDEPSEDAGETPVP-----DSKGEETAKDAEAEQKVDGDKET--SAKDKSEGDS 544

  Fly   390 NKSQTLPRNLGSKTSVGAVQRQPAKTAATPPAVRRQFSSGRNTPPQRSRTPINNNGPSGSGASTP 454
            ...:|..:.....:|:.:.|:.|.|:|..|........   |..|:..:..:.....|.|.    
  Fly   545 PNIETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMDVD---NVAPEEPKKAVEQEVDSSSS---- 602

  Fly   455 VVSVKGVEQKLVQL-------------------ILD-----EIVEGGAKVE---------WTDIA 486
              :.:..|..|.:|                   ::|     ::::..||.|         |.||.
  Fly   603 --NDEYYEPTLAELTNFLDNPPEEFADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIG 665

  Fly   487 GQDVAKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISA 549
            ..:..::.|:..|:.|...||:.  .||.||: |:||.||||.||||||:|:|.|....|:::..
  Fly   666 ALEKIREELKLAVLAPVKYPEMLERLGLTAPS-GVLLCGPPGCGKTLLAKAIANEAGINFISVKG 729

  Fly   550 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERS--SSEHEASRRLKTEFLVEFDG 612
            ..|.:.|||:.|:.|||.|..||:..|.:||.||.|||..:||  ...:.:..|:..:.|.|.||
  Fly   730 PELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDG 794

  Fly   613 LPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DT 673
            :   .:...:.:|||||||..:|.|.||  |....:||..|::..|..:|....:....|:  |.
  Fly   795 V---EERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADD 856

  Fly   674 EALRRLAKITDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDISAMRAITEQDFHSSLKRIRRS 737
            ..|..:|..|:||:|:||..|.|.|::..:|: ||.......|:    .:..|.|..:|:::|.|
  Fly   857 VDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDL----CVRSQHFQEALQQLRPS 917

  Fly   738 VAPQSLNSYEKWSQDY 753
            |..|....|:|....|
  Fly   918 VNEQDRKIYDKLRLKY 933

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142 19/100 (19%)
P-loop_NTPase 482..>538 CDD:304359 26/57 (46%)
AAA 515..652 CDD:214640 58/140 (41%)
AAA 519..650 CDD:278434 56/134 (42%)
Vps4_C <722..754 CDD:286426 10/32 (31%)
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 160/671 (24%)
AAA 287..418 CDD:278434 23/130 (18%)
P-loop_NTPase 679..>716 CDD:304359 20/37 (54%)
AAA 699..830 CDD:278434 55/133 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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