DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spas and nsfa

DIOPT Version :9

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_021325418.1 Gene:nsfa / 368483 ZFINID:ZDB-GENE-030616-37 Length:747 Species:Danio rerio


Alignment Length:407 Identity:108/407 - (26%)
Similarity:174/407 - (42%) Gaps:98/407 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   371 ASGRKLTIGSKRPVNLAVANKSQTLPRNLGSK-TSVGAVQRQPAKTAATPPAVRRQFSSGRNTPP 434
            |||:|    .|..|.|.|.|......::..|. |.||..:.:.|:                    
Zfish   165 ASGKK----QKIEVGLLVGNSQVIFEKSESSSLTLVGKAKTKEAR-------------------- 205

  Fly   435 QRSRTPINNNGPSGSGASTPVVSVKGVEQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMV 499
               :|.||   |..:                    .:::..||...|::||     .::|....|
Zfish   206 ---QTIIN---PDWN--------------------FEKMGIGGLDKEFSDI-----FRRAFASRV 239

  Fly   500 ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNI-SAASLTSKYVGDGEKL 563
            ..|.:..::  |.: ..||:|||||||.||||:||.:....:|....| :...:.:||||:.|..
Zfish   240 FPPDIVEQM--GCK-HVKGILLFGPPGCGKTLMARQIGKMLNAREPKIVNGPEILNKYVGESEAN 301

  Fly   564 VRALFAVARHMQP--------SIIFIDEVDSLLSER-----SSSEHEASRRLKTEFLVEFDGLPG 615
            :|.|||.|...|.        .||..||:|::..:|     |:..|:.   :..:.|.:.||:  
Zfish   302 IRKLFADAEEEQKRLGANSGLHIIIFDELDAICKQRGTGASSTGVHDT---VVNQLLSKIDGV-- 361

  Fly   616 NPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLN------RLLQKQGSPLD 672
             ...:.|:|:..||||..:|||.:|  ||..::.:.||||:.|..:||      |..:...|.:|
Zfish   362 -EQLNNILVIGMTNRPDLIDEALMRPGRFEVKMEIGLPDEKGRVQILNIHTAKMREFKLLASDVD 425

  Fly   673 TEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRA----ITEQDFHSSLKR 733
               ::.||..|..|||::|..|.: ||.......:::....:::...||    :|..||.:||  
Zfish   426 ---VKELAAETKNYSGAELEGLVR-AAQSTAMNRHIKATSTVEVDMERAEKLQVTRTDFMASL-- 484

  Fly   734 IRRSVAPQSLNSYEKWS 750
             ...:.|....:.|.:|
Zfish   485 -NNDIKPAFGTNQEDYS 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
P-loop_NTPase 482..>538 CDD:304359 21/55 (38%)
AAA 515..652 CDD:214640 52/152 (34%)
AAA 519..650 CDD:278434 49/146 (34%)
Vps4_C <722..754 CDD:286426 8/29 (28%)
nsfaXP_021325418.1 CDC48_N 6..83 CDD:215012
CDC48_2 111..183 CDD:215011 9/21 (43%)
TIP49 160..>606 CDD:332389 108/407 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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