DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and nsfa

DIOPT Version :10

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_021325418.1 Gene:nsfa / 368483 ZFINID:ZDB-GENE-030616-37 Length:747 Species:Danio rerio


Alignment Length:407 Identity:108/407 - (26%)
Similarity:174/407 - (42%) Gaps:98/407 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   371 ASGRKLTIGSKRPVNLAVANKSQTLPRNLGSK-TSVGAVQRQPAKTAATPPAVRRQFSSGRNTPP 434
            |||:|    .|..|.|.|.|......::..|. |.||..:.:.|:                    
Zfish   165 ASGKK----QKIEVGLLVGNSQVIFEKSESSSLTLVGKAKTKEAR-------------------- 205

  Fly   435 QRSRTPINNNGPSGSGASTPVVSVKGVEQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMV 499
               :|.||   |..:                    .:::..||...|::||     .::|....|
Zfish   206 ---QTIIN---PDWN--------------------FEKMGIGGLDKEFSDI-----FRRAFASRV 239

  Fly   500 ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNI-SAASLTSKYVGDGEKL 563
            ..|.:..::  |.: ..||:|||||||.||||:||.:....:|....| :...:.:||||:.|..
Zfish   240 FPPDIVEQM--GCK-HVKGILLFGPPGCGKTLMARQIGKMLNAREPKIVNGPEILNKYVGESEAN 301

  Fly   564 VRALFAVARHMQP--------SIIFIDEVDSLLSER-----SSSEHEASRRLKTEFLVEFDGLPG 615
            :|.|||.|...|.        .||..||:|::..:|     |:..|:.   :..:.|.:.||:  
Zfish   302 IRKLFADAEEEQKRLGANSGLHIIIFDELDAICKQRGTGASSTGVHDT---VVNQLLSKIDGV-- 361

  Fly   616 NPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLN------RLLQKQGSPLD 672
             ...:.|:|:..||||..:|||.:|  ||..::.:.||||:.|..:||      |..:...|.:|
Zfish   362 -EQLNNILVIGMTNRPDLIDEALMRPGRFEVKMEIGLPDEKGRVQILNIHTAKMREFKLLASDVD 425

  Fly   673 TEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRA----ITEQDFHSSLKR 733
               ::.||..|..|||::|..|.: ||.......:::....:::...||    :|..||.:||  
Zfish   426 ---VKELAAETKNYSGAELEGLVR-AAQSTAMNRHIKATSTVEVDMERAEKLQVTRTDFMASL-- 484

  Fly   734 IRRSVAPQSLNSYEKWS 750
             ...:.|....:.|.:|
Zfish   485 -NNDIKPAFGTNQEDYS 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
RecA-like_spastin 484..648 CDD:410932 57/179 (32%)
AAA_lid_3 676..727 CDD:465537 13/54 (24%)
Vps4_C <722..754 CDD:462762 8/29 (28%)
nsfaXP_021325418.1 CDC48_N 5..85 CDD:426738
CDC48_2 111..183 CDD:215011 9/21 (43%)
CDC48 160..>606 CDD:273521 108/407 (27%)
RecA-like_NSF-SEC18_r1-like 219..395 CDD:410912 60/189 (32%)
Blue background indicates that the domain is not in the aligned region.

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