DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and atad1b

DIOPT Version :9

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_001019592.1 Gene:atad1b / 368412 ZFINID:ZDB-GENE-030616-44 Length:362 Species:Danio rerio


Alignment Length:376 Identity:123/376 - (32%)
Similarity:204/376 - (54%) Gaps:41/376 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   392 SQTLPRNLGSKTSVGAVQRQPAKTAAT-----------PPAVRRQFSSGRNTPPQRSRTPINNNG 445
            ::.:.|.||....:|.:.|.....|.|           .|..:::..:.:.......:..:.|  
Zfish     8 TENITRPLGRNEVIGLLFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQAEKLMRQIGVQN-- 70

  Fly   446 PSGSGASTPVVSVKGVEQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFT 510
                      |.:...|..:...::|.:.   .::.|.||||.|.....|::.||||..:..||.
Zfish    71 ----------VKLSEYEMSIAAHLVDPLT---MQITWYDIAGLDEVITELKDTVILPIQKRHLFE 122

  Fly   511 GLR--APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARH 573
            |.|  .|.||:||:||||.||||:|:|.|.|....|:|:..::||.|:.|:.:||..|:|::|..
Zfish   123 GSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAIK 187

  Fly   574 MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD---RIVVLAATNRPQELD 635
            :|||||||||:||.|..||||:|||:..:|.:|:..:|||    |.|   :::::.||||||:||
Zfish   188 LQPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGL----DTDYNCQVIIMGATNRPQDLD 248

  Fly   636 EAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAAL 700
            .|.|||...|.:::.|:.:.|:.:|..:|:.:......| |..:||.|||:|||||..:.:||||
Zfish   249 SAILRRMPTRFHINQPNARQRKDILKLILENENVESAVE-LSEIAKQTDGFSGSDLREMCRDAAL 312

  Fly   701 EPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQ 751
            ..:|:...::....|.  :|.|.::|...:::::::|   :|...:|.:.|
Zfish   313 LCVRDFVHQESPEEDF--IRPIRQEDLQRAIEKMKKS---KSAGVHEAFMQ 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
P-loop_NTPase 482..>538 CDD:304359 30/57 (53%)
AAA 515..652 CDD:214640 67/139 (48%)
AAA 519..650 CDD:278434 64/133 (48%)
Vps4_C <722..754 CDD:286426 6/30 (20%)
atad1bNP_001019592.1 AAA 129..258 CDD:214640 66/132 (50%)
AAA 133..261 CDD:278434 64/131 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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