DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and Afg2a

DIOPT Version :10

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_001402011.1 Gene:Afg2a / 361935 RGDID:1310478 Length:893 Species:Rattus norvegicus


Alignment Length:465 Identity:146/465 - (31%)
Similarity:209/465 - (44%) Gaps:89/465 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   316 QMQRLSLKEKQKEEAQSKP---------QKTREPMLAGMTNEPMKLRVRSSGYGPKATTSAQPTA 371
            |:.:|.|||.|...:||.|         .|..| :|..:|..|..    .||.|.:..|      
  Rat   233 QLSQLDLKEPQSPASQSTPCKPINDRTMNKAGE-VLLDVTQSPRD----GSGLGLEEIT------ 286

  Fly   372 SGRKLTIGSKRPVNLAVANKSQTLPRNLGSKTSVGAVQRQPAKTAATPPAVRRQFSSGRNTPPQR 436
             |.|.:..|.:..|....::.:.|     ..||.||.                            
  Rat   287 -GLKCSFDSSKEGNTQPISEEKLL-----KSTSAGAK---------------------------- 317

  Fly   437 SRTPINNNGPSGSGASTPVVSVKGV-----EQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQ 496
                 ||.......:||..::::.:     ||           :...||.:..|.|.:...:|::
  Rat   318 -----NNTDTFYFISSTTRINLRKICTNSKEQ-----------DSQFKVTYDMIGGLNSQLKAIR 366

  Fly   497 EMVILPSVRPELFTGLRAPA-KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDG 560
            |::.||..:||||.....|| :||||:||||.|||::|||||.|..|....|:...:.||:.|:.
  Rat   367 EIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGET 431

  Fly   561 EKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVL 625
            |..:|.:||.|....||||||||:|:|..:|..::.|..:|:....|...||:.......|::||
  Rat   432 EARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVL 496

  Fly   626 AATNRPQELDEAALR---RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYS 687
            .||||||.|| ||||   ||.|.:.:.:|:.|.|..:|.:||::....|....|.|||....||.
  Rat   497 GATNRPQALD-AALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYV 560

  Fly   688 GSDLTALAKDAALEPIRELNVEQVKCLD--ISAMRAITEQDFHSSLKRIR----RSVAPQSLNSY 746
            |:||.||..:|.|..:|.:..:|....|  ::.|..||..||...:..||    |.||....|  
  Rat   561 GADLKALCNEAGLYALRRVLRKQPNLPDSKVAGMVKITLNDFLQGMNDIRPSAMREVAIDVPN-- 623

  Fly   747 EKWSQDYGDI 756
            ..|| |.|.:
  Rat   624 VSWS-DIGGL 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
RecA-like_spastin 484..648 CDD:410932 73/167 (44%)
AAA_lid_3 676..727 CDD:465537 19/52 (37%)
Vps4_C <722..754 CDD:462762 13/35 (37%)
Afg2aNP_001402011.1 CDC48_N 64..132 CDD:451359
CDC48 <323..889 CDD:273521 117/325 (36%)
Blue background indicates that the domain is not in the aligned region.

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