DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and TER94

DIOPT Version :9

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster


Alignment Length:643 Identity:167/643 - (25%)
Similarity:271/643 - (42%) Gaps:134/643 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 KEQQQSLNHPSELNREGDGQEQQLS----------NQPQRFRPIQPLEMAANRPGGGY----SPG 220
            :|:::|||...  ..:..|..:||:          ..|..|:.|      ..:|..|.    .||
  Fly   214 EEEEESLNAVG--YDDIGGCRKQLAQIKEMVELPLRHPSLFKAI------GVKPPRGILMYGPPG 270

  Fly   221 PGDPLLAKQKHHHRRAFEYISKALKIDEENEGHKELAIELYRKGIKELEDGIAVDCWSGRGDVWD 285
            .|..|:|:...:...||.::....:|..:..|..|..:   ||..:|.|.......:....|.  
  Fly   271 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL---RKAFEEAEKNSPAIIFIDEIDA-- 330

  Fly   286 RAQRLHDKMQTNLSMARDRLHFLALREQDLQMQRLSLKEKQKEEAQSKPQKTREPMLAGMTNEPM 350
                        ::..||:.|  ...|:.:..|.|:|.:..|        |:...::...||.|.
  Fly   331 ------------IAPKRDKTH--GEVERRIVSQLLTLMDGMK--------KSSHLIVMAATNRPN 373

  Fly   351 KL--RVRSSGYGPKATTSAQPTASGR--KLTIGSKR-----PVNL--AVANKSQTLPRNLGSKTS 404
            .:  .:|..|...:......|.|:||  .|.|.:|.     .|:|  ..|.....:..:|.|..|
  Fly   374 SIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLHDDVDLEQIAAESHGHVGADLASLCS 438

  Fly   405 VGAVQ--------------RQPAKTAATPPAVRRQFSSGRNTPPQRSRTPINNNGPSGSGASTPV 455
            ..|:|              :..|:..|:.......|           |..:..:.||.       
  Fly   439 EAALQQIREKMDLIDLEDDKIDAEVLASLAVTMENF-----------RYAMTKSSPSA------- 485

  Fly   456 VSVKGVEQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFT--GLRAPAKG 518
                          |.|.|.......||||.|.:..|:.|||:|..|...|:.|.  |:: |::|
  Fly   486 --------------LRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQ-PSRG 535

  Fly   519 LLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE 583
            :|.:||||.||||||:|:|.||.|.|:::....|.:.:.|:.|..||.:|..||...|.::|.||
  Fly   536 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDE 600

  Fly   584 VDSLLSERSSSEHE---ASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFT 643
            :||:...|..:..:   |:.|:..:.|.|.||:....:   :.::.|||||..:|.|.||  |..
  Fly   601 LDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKN---VFIIGATNRPDIIDPAILRPGRLD 662

  Fly   644 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTALAKDAALEPIRELN 707
            :.:|:.|||:::||.:|...|:|  |||..|. |..:||:|.|:||:|||.:.:.|....||:..
  Fly   663 QLIYIPLPDDKSREAILKANLRK--SPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAI 725

  Fly   708 VEQVK-----------CLDI---SAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQ 751
            ..:::           .:|:   ..:..||...|..::|..||||:...:..||.::|
  Fly   726 EAEIRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQ 783

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142 13/77 (17%)
P-loop_NTPase 482..>538 CDD:304359 28/57 (49%)
AAA 515..652 CDD:214640 52/141 (37%)
AAA 519..650 CDD:278434 49/135 (36%)
Vps4_C <722..754 CDD:286426 11/30 (37%)
TER94NP_001097249.1 CDC48 47..787 CDD:273521 167/643 (26%)
CDC48_N 47..129 CDD:280513
CDC48_2 153..213 CDD:215011
AAA 263..392 CDD:278434 29/155 (19%)
AAA 536..669 CDD:278434 49/135 (36%)
Vps4_C <741..783 CDD:286426 11/41 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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