DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and vcp

DIOPT Version :10

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_958889.1 Gene:vcp / 327197 ZFINID:ZDB-GENE-030131-5408 Length:806 Species:Danio rerio


Alignment Length:648 Identity:167/648 - (25%)
Similarity:280/648 - (43%) Gaps:145/648 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 KEQQQSLNHPSELNREG-DGQEQQLS----------NQPQRFRPIQPLEMAANRPGGGY----SP 219
            :::::|||   |:..:. .|..:||:          ..|..|:.|      ..:|..|.    .|
Zfish   192 EDEEESLN---EVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAI------GVKPPRGILLYGPP 247

  Fly   220 GPGDPLLAKQKHHHRRAFEYISKALKIDEENEGHKELAIELYRKGIKELE------------DGI 272
            |.|..|:|:...:...||.::....:|..:..|..|..:   ||..:|.|            |.|
Zfish   248 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL---RKAFEEAEKNAPAIIFIDELDAI 309

  Fly   273 AVDCWSGRGDVWDRAQRLHDKMQTNLSMARDRLHFLALREQDLQMQRLSLKEKQKEEAQSKPQKT 337
            |           .:.::.|.::                 |:.:..|.|:|.:..|:.|       
Zfish   310 A-----------PKREKTHGEV-----------------ERRIVSQLLTLMDGLKQRA------- 339

  Fly   338 REPMLAGMTNEPMKL--RVRSSGYGPKATTSAQPTASGRK--LTIGSKRPVNLA-------VANK 391
             ..::...||.|..:  .:|..|...:......|.|:||.  |.|.:|. :.||       |||:
Zfish   340 -HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-MKLADDVDLEQVANE 402

  Fly   392 SQTLPRNLG-------SKTSVGAVQRQPAKTAATPPAVRRQFSSGRNTPPQRSRTPINNNGPSGS 449
            :.   .::|       |:.::.|::::..........:..:..:.........|..::.:.||. 
Zfish   403 TH---GHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA- 463

  Fly   450 GASTPVVSVKGVEQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFT--GL 512
                                |.|.|.....:.|.||.|.|..|:.|||:|..|...|:.|.  |:
Zfish   464 --------------------LRETVVEVPNITWEDIGGLDDVKRELQELVQYPVEHPDKFLKFGM 508

  Fly   513 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPS 577
             .|:||:|.:||||.||||||:|:|.||.|.|::|....|.:.:.|:.|..||.:|..||...|.
Zfish   509 -TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPC 572

  Fly   578 IIFIDEVDSLLSERSSSEHE---ASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 639
            ::|.||:||:...|..:..:   |:.|:..:.|.|.||:....:   :.::.|||||..:|.|.|
Zfish   573 VLFFDELDSIAKARGGNVGDGGGAADRVINQILTEMDGMSSKKN---VFIIGATNRPDIIDPAIL 634

  Fly   640 R--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTALAKDAALE 701
            |  |..:.:|:.||||::|..:|...|:|  ||:..:. |..|||:|:|:||:|||.:.:.|...
Zfish   635 RPGRLDQLIYIPLPDEKSRIAILKANLRK--SPISKDVDLDFLAKMTNGFSGADLTEICQRACKL 697

  Fly   702 PIR-----ELNVEQVKCLDISAMRA--------ITEQDFHSSLKRIRRSVAPQSLNSYEKWSQ 751
            .||     |:..|:.:..:.|||..        |.:..|..:::..||||:...:..||.::|
Zfish   698 AIRESIENEIRRERERQTNPSAMEVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQ 760

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142 13/89 (15%)
RecA-like_spastin 484..648 CDD:410932 65/170 (38%)
AAA_lid_3 676..727 CDD:465537 20/63 (32%)
Vps4_C <722..754 CDD:462762 9/30 (30%)
vcpNP_958889.1 CDC48 25..764 CDD:273521 167/648 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 708..727 4/18 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 768..806
Blue background indicates that the domain is not in the aligned region.

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