DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and vps4

DIOPT Version :9

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_593086.1 Gene:vps4 / 2542054 PomBaseID:SPAC2G11.06 Length:432 Species:Schizosaccharomyces pombe


Alignment Length:350 Identity:131/350 - (37%)
Similarity:207/350 - (59%) Gaps:35/350 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   437 SRTPINNNGPSGSGASTPVVSVKGVEQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVIL 501
            |::.::|....||.:.|...::....:||...:...|:.....|.|.||||.:.||:||:|.|:|
pombe    83 SKSRVSNGNVEGSNSPTANEALDSDAKKLRSALTSAILVEKPNVRWDDIAGLENAKEALKETVLL 147

  Fly   502 PSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRA 566
            |...|:||:..|.|..|:||:||||.||:.||:|||||..:||.:||::.|.||::|:.|:|||.
pombe   148 PIKLPQLFSHGRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQ 212

  Fly   567 LFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 631
            ||.:||..:||||||||:|||...||..|.|:|||:||||||:.:|:..:..|  ::||.|||.|
pombe   213 LFEMAREQKPSIIFIDEIDSLCGSRSEGESESSRRIKTEFLVQMNGVGKDESG--VLVLGATNIP 275

  Fly   632 QELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 696
            ..||.|..|||.||:|:.||:...|..:....:.|..|.|.::..:.|||:||||||||::.:.:
pombe   276 WTLDSAIRRRFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVR 340

  Fly   697 DAALEPIRELNVE--------------------------------QVKCLDISAMRAITEQDFHS 729
            ||.:||:|.::..                                :|...||...: :|.:||:|
pombe   341 DAIMEPVRRIHTATHFKEVYDNKSNRTLVTPCSPGDPDAFESSWLEVNPEDIMEPK-LTVRDFYS 404

  Fly   730 SLKRIRRSVAPQSLNSYEKWSQDYG 754
            ::::::.::....:..:.::::|:|
pombe   405 AVRKVKPTLNAGDIEKHTQFTKDFG 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
P-loop_NTPase 482..>538 CDD:304359 31/55 (56%)
AAA 515..652 CDD:214640 75/136 (55%)
AAA 519..650 CDD:278434 72/130 (55%)
Vps4_C <722..754 CDD:286426 5/31 (16%)
vps4NP_593086.1 MIT_VPS4 5..79 CDD:239141
PTZ00454 7..387 CDD:240423 122/305 (40%)
P-loop_NTPase 130..>184 CDD:304359 30/53 (57%)
AAA 165..294 CDD:278434 72/130 (55%)
Vps4_C 370..429 CDD:286426 8/59 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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