DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spas and Katna1

DIOPT Version :9

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_035965.2 Gene:Katna1 / 23924 MGIID:1344353 Length:493 Species:Mus musculus


Alignment Length:500 Identity:179/500 - (35%)
Similarity:265/500 - (53%) Gaps:73/500 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 QRLHDKMQTNLSMARDRLHFLALREQDLQM-QRLSLKEKQKEEAQSKPQKTREPMLAGMTN---- 347
            |.:.|:|...|...:| .|   ||::..|: |.::::.||.::.    .||.|.....:|:    
Mouse    32 QGVLDQMNKYLYSVKD-TH---LRQKWQQVWQEINVEAKQVKDI----MKTLESFKLDITSLQAA 88

  Fly   348 ---------EPMKLRV---RSSGYGPKATTSAQ---PTASGRKLTIGSKRPVNLAVANKSQTLPR 397
                     |...|.|   |....||:...|:|   |...       |.||..:..|::..  |:
Mouse    89 QHEFPAAEGEVWSLPVPVERRPLPGPRKRQSSQHSDPKPH-------SNRPSTVVRAHRPS--PQ 144

  Fly   398 NLGSKTSVGAVQRQPAKTAATPPAVRRQFSSGRNTPPQRSRTPINNNGPSGS---GASTPVVSVK 459
            ||.:........|:           :::.|.||.   ::::.|.....|..:   |.        
Mouse   145 NLHNDRGKAVRSRE-----------KKEQSKGRE---EKNKLPAAVTEPEANKFDGT-------- 187

  Fly   460 GVEQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGP 524
            |.::.||:.:..:|:.....|.|.|||....||:.|||.|:||...||.|.|:|.|.||:|:.||
Mouse   188 GYDKDLVEALERDIISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFKGIRRPWKGVLMVGP 252

  Fly   525 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS 589
            ||.||||||:||||||..||.|:|:::|||||.|:.|||||.||.:||...|:.|||||:||:.|
Mouse   253 PGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICS 317

  Fly   590 ER-SSSEHEASRRLKTEFLVEFDGLPGNPDGD----RIVVLAATNRPQELDEAALRRFTKRVYVS 649
            .| :|.|||||||:|.|.||:.||:.|..:.|    .::||||||.|.::|||..||..||:|:.
Mouse   318 RRGTSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIP 382

  Fly   650 LPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE----LNVEQ 710
            ||..:.||.|| |:..::....|...|..:|:..:||||:|:|.:.:||:|..:|.    |..|:
Mouse   383 LPSAKGREELL-RISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEE 446

  Fly   711 VKCLDISAMR-AITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 754
            ::.|...||. ..|.:||..:||:|.:||:...:..||||..::|
Mouse   447 IRNLSREAMHMPTTMEDFEMALKKISKSVSAADIERYEKWIVEFG 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142 6/19 (32%)
P-loop_NTPase 482..>538 CDD:304359 33/55 (60%)
AAA 515..652 CDD:214640 81/141 (57%)
AAA 519..650 CDD:278434 77/135 (57%)
Vps4_C <722..754 CDD:286426 12/31 (39%)
Katna1NP_035965.2 AAA 243..384 CDD:214640 80/140 (57%)
AAA 247..383 CDD:278434 77/135 (57%)
Vps4_C <458..491 CDD:286426 12/32 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.