DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and Pex6

DIOPT Version :9

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_663463.1 Gene:Pex6 / 224824 MGIID:2385054 Length:981 Species:Mus musculus


Alignment Length:753 Identity:203/753 - (26%)
Similarity:294/753 - (39%) Gaps:191/753 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 SLIYQLFC---------IFRYL--------YGASTKVIYRPHRRDCNIEIVVQNSSKEQQQSLNH 178
            :|.:.|.|         |.|||        .|:.:.:...|..|:.:|||:   ||.....:.|:
Mouse   277 TLAFNLGCDPLEVGELRIQRYLEGSIAPENKGSCSPLPGPPFARELHIEIL---SSPHYSANGNY 338

  Fly   179 PSELNR---------EGD-------GQEQQLSNQPQRFRPIQPLEMAANRPGGGYSPGPGDPLLA 227
            ...|.|         |||       ||.:.|....:|....:.:.....:..|....||....||
Mouse   339 DHVLYRHFQTPRVVQEGDVLCVSTAGQVEILEGSLERLPRWREMFFKVKKTVGEAPEGPASAFLA 403

  Fly   228 KQKHHHRRAFEYISKALKIDEENEGHKELAIELYRKG-----IKELEDGIAVDCWSGRGDVWDRA 287
            ...|                          ..||..|     :..|.        |||...||..
Mouse   404 DTTH--------------------------TSLYLAGTALSHVPSLP--------SGRSPPWDSL 434

  Fly   288 QR-------------LHDKMQ-----------------------TNLSMARDR--LHFLALREQD 314
            ..             |...:|                       |.::.|..|  ||.|.:....
Mouse   435 SPPGLEALVNELCAILKPHLQPGGTLLTGTSCVLLQGPPGSGKTTAVTAACSRLGLHLLKVPCSS 499

  Fly   315 LQMQRLSLKEKQKEEAQSKPQKTREPMLAGMTNEPMKLRVRSSGYGPKATTSAQPTASGRKLTIG 379
            |........|.:.:...|:.::.| |.:..:|...:..|.| .|.|    ..|:..|:.|.|.:.
Mouse   500 LCADSSRAVETKLQATFSRARRCR-PAVLLLTAVDLLGRDR-DGLG----EDARVAATLRHLLLD 558

  Fly   380 ----SKRPVNLAVANKS--QTLPRNLGSKTSVGAVQRQPAKTAATPPAVRRQFSS----GRNTP- 433
                |:.|..:.||..|  |.||.::  :|:.......|..:.|...::.:..::    |:... 
Mouse   559 EDALSRCPPLMVVATTSRVQDLPTDV--QTAFPHELEVPVLSEAQRLSILQALTAHLPLGQEVNL 621

  Fly   434 PQRSR----------------------TPINNNGPSGS----------GASTPVVSVKGVEQKLV 466
            ||.:|                      |.|..:|.:|.          .|..|::: :...|.|.
Mouse   622 PQLARRCAGFVVGDLYALLTHTCRAACTRIRASGSAGGLSEEDEGDLCVAGFPLLA-EDFGQALD 685

  Fly   467 QLILDEIVEGGA----KVEWTDIAG-QDVAKQALQEMVILPSVRPELFT-GLRAPAKGLLLFGPP 525
            ||........||    .|.|.|:.| |||.|:.| |.:.||...|||.: |||  ..||||.|||
Mouse   686 QLQTAHSQAVGAPRIPSVSWHDVGGLQDVKKEIL-ETIQLPLEHPELLSLGLR--RSGLLLHGPP 747

  Fly   526 GNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 590
            |.||||||:|||||||.|||::....|.:.|||..|:.||.:||.||...|.|||.||:|||...
Mouse   748 GTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPS 812

  Fly   591 RSSSEHEAS--RRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLP 651
            |..|.....  .|:.::.|.|.|||....|   :.|:.|||||..||.|.||  ||.|.|:|...
Mouse   813 RGRSGDSGGVMDRVVSQLLAELDGLHSTQD---VFVIGATNRPDLLDPALLRPGRFDKLVFVGAS 874

  Fly   652 DEQTRELLLNRLLQKQGSPLDTEALRRLAKITD----GYSGSDLTALAKDAALEPI--RELNVEQ 710
            :::..:|   |:|.........||...||.:.|    ..:|:||.:|..||.:..:  |..::|:
Mouse   875 EDRASQL---RVLSAITRKFKLEASVSLANVLDCCPPQLTGADLYSLCSDAMMTALKRRVRDLEE 936

  Fly   711 VKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEK 748
            ...|..||: .:|.:|...:..|::.||:.|.|..|::
Mouse   937 GLELRSSAL-LLTMEDLLQAAARLQPSVSEQELLRYKR 973

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142 17/120 (14%)
P-loop_NTPase 482..>538 CDD:304359 33/57 (58%)
AAA 515..652 CDD:214640 69/140 (49%)
AAA 519..650 CDD:278434 68/134 (51%)
Vps4_C <722..754 CDD:286426 8/27 (30%)
Pex6NP_663463.1 SpoVK 464..968 CDD:223540 159/522 (30%)
AAA 467..596 CDD:278434 29/136 (21%)
AAA 744..872 CDD:278434 64/130 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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