DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and vps-4

DIOPT Version :10

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_490816.4 Gene:vps-4 / 189590 WormBaseID:WBGene00021334 Length:430 Species:Caenorhabditis elegans


Alignment Length:331 Identity:133/331 - (40%)
Similarity:192/331 - (58%) Gaps:40/331 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   462 EQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPG 526
            ::|....:...||.....|:||||||.:.||:||:|.||||...|:||||.|.|.:|:|||||||
 Worm    97 KKKFQDKLSGAIVMEKPNVKWTDIAGLEGAKEALKEAVILPIKFPQLFTGNRKPWQGILLFGPPG 161

  Fly   527 NGKTLLARAVATEC-SATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 590
            .||:.:|:|||||. .:||.:||::.|.||::|:.||||:.|||:||..:||||||||:|||.|.
 Worm   162 TGKSYIAKAVATEAGESTFFSISSSDLMSKWLGESEKLVKNLFALAREHKPSIIFIDEIDSLCSA 226

  Fly   591 RSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQT 655
            ||.:|.|::||:||||:|:..|:..|.||  |:||.|||.|..||.|..|||.||:|:.|||...
 Worm   227 RSDNESESARRIKTEFMVQMQGVGLNNDG--ILVLGATNIPWILDSAIRRRFEKRIYIPLPDIHA 289

  Fly   656 RELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL-------------- 706
            |:.:....:.|..:.|..:..:.||:..:||||.|::.|.|||.::|:|.:              
 Worm   290 RKEMFRIDVGKNYNTLTDQDFKVLAERCEGYSGYDISILVKDALMQPVRRVQSATHFKHVSGPSP 354

  Fly   707 -------------------NVEQVKCLDIS----AMRAITEQDFHSSLKRIRRSVAPQSLNSYEK 748
                               :...:..||:.    |...::.||...||..::.:|....|:..|.
 Worm   355 KDPNVIAHDLLTPCSPGDPHAIAMNWLDVPGDKLANPPLSMQDISRSLASVKPTVNNTDLDRLEA 419

  Fly   749 WSQDYG 754
            :..|:|
 Worm   420 FKNDFG 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
RecA-like_spastin 484..648 CDD:410932 95/164 (58%)
AAA_lid_3 676..727 CDD:465537 17/87 (20%)
Vps4_C <722..754 CDD:462762 8/31 (26%)
vps-4NP_490816.4 MIT_VPS4 4..79 CDD:239141
RecA-like_VPS4 112..282 CDD:410929 98/171 (57%)
AAA_lid_3 307..350 CDD:465537 13/42 (31%)
Vps4_C 365..425 CDD:462762 11/59 (19%)
Blue background indicates that the domain is not in the aligned region.

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