DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and Vps4a

DIOPT Version :10

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_569053.1 Gene:Vps4a / 116733 MGIID:1890520 Length:437 Species:Mus musculus


Alignment Length:368 Identity:132/368 - (35%)
Similarity:196/368 - (53%) Gaps:60/368 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   435 QRSRTPINNNGPSGSGASTPVVSVKGVEQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMV 499
            :..:.|:..|...|.|:.:........::||.:.::..:|.....:.|.|:||.:.||:||:|.|
Mouse    79 KHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAV 143

  Fly   500 ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC-SATFLNISAASLTSKYVGDGEKL 563
            |||...|.||||.|.|.:|:|||||||.||:.||:|||||. ::||.::|::.|.||::|:.|||
Mouse   144 ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKL 208

  Fly   564 VRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAAT 628
            |:.||.:||..:||||||||||||...|:.:|.||:||:||||||:..|:..|.||  .:||.||
Mouse   209 VKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDG--TLVLGAT 271

  Fly   629 NRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTA 693
            |.|..||.|..|||.||:|:.||:|..|..:....|......|....:..||:.|:||||:|::.
Mouse   272 NIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISI 336

  Fly   694 LAKDAALEPIRELN-----------------------------------------------VEQV 711
            :.:|:.::|:|::.                                               :|.|
Mouse   337 IVRDSLMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPV 401

  Fly   712 KCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 754
            .|:          .|...||...|.:|....|...:|:|:|:|
Mouse   402 VCM----------SDMLRSLATTRPTVNADDLLKVKKFSEDFG 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
RecA-like_spastin 484..648 CDD:410932 93/164 (57%)
AAA_lid_3 676..727 CDD:465537 14/97 (14%)
Vps4_C <722..754 CDD:462762 9/31 (29%)
Vps4aNP_569053.1 PTZ00454 4..348 CDD:240423 118/270 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 75..106 4/26 (15%)
RecA-like_VPS4 121..291 CDD:410929 94/171 (55%)
Vps4_C 374..434 CDD:462762 12/69 (17%)
Blue background indicates that the domain is not in the aligned region.

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