DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and smc6.1

DIOPT Version :9

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_004918255.2 Gene:smc6.1 / 100495634 XenbaseID:XB-GENE-6071284 Length:1128 Species:Xenopus tropicalis


Alignment Length:727 Identity:131/727 - (18%)
Similarity:245/727 - (33%) Gaps:247/727 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 VIYRPHRRDCNIEI-VVQNSSKEQQQSLNH---------PSELNREGDGQEQQLS-NQPQ----R 199
            |.|:....:|..:: :.:...:.:|:.|::         |..:..:.|.|:::.| |:.:    |
 Frog   344 VKYKQKIDECQGKVNIAEEKFRAKQEELDNITQEAVALKPQGIALKEDAQKKRKSYNESEVLYNR 408

  Fly   200 FR-PIQPLEMAANRPGGGYSPGPGDPLLAKQKHHHRRAFEYISKALKIDEENEGHKELAIELYRK 263
            .| .::.||..|            |.|       |:|..|     ||...:|....|   ::.|:
 Frog   409 HRMELKRLERDA------------DQL-------HKRIEE-----LKKSADNASESE---KMARQ 446

  Fly   264 GIKELEDGIAVDCWSGRGDVWDRAQRLHDK-MQTNLSMARDRLHFLALREQDLQM--------QR 319
              ||:            ..:.||.:.|||| :.||..:.:.:......:|:.:::        ||
 Frog   447 --KEI------------AQIRDRMKALHDKEITTNQQIHQFQQAIEKYKEERIRIGNEERNVKQR 497

  Fly   320 LSLKEKQ-KEEAQSKPQKTRE-----PMLAGMTNEPMKL-RVRSSGYGPKATTSAQPTASGRKLT 377
            |...::| :|..:||..:.|.     |.|....:|..|| |.|....||                
 Frog   498 LEQHKRQLRELHESKTDRLRRFGQNMPALLAAIDEAYKLGRFRKKPVGP---------------- 546

  Fly   378 IGS---KRPVNLAVA----------------NKSQTLPRNLGSKTSVGAVQRQPAKTAATPPAVR 423
            :|:   .:...||:|                ::.:.:.:|:.|                      
 Frog   547 LGACIHLKDQELALAVECCLKGLLFAFCCDNHQDERMLQNIMS---------------------- 589

  Fly   424 RQFSSGRNTPPQ-------------RSRTPINNNGPSGSGA---STPVVS-----VKGVEQKLVQ 467
            |::..||.  ||             ..|...:.|.|:...|   ..|||:     ::|||..|: 
 Frog   590 REYPRGRR--PQIIVNEFRDQVYDVSRRATFHPNHPTVLTALEIDHPVVANCLIDMRGVETILI- 651

  Fly   468 LILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 532
                             |.|.|.|::.:|:.....:.| |.|||..........:........:|
 Frog   652 -----------------IKGTDEAREIMQKRAPPRNCR-EAFTGEGDQVYTNRYYSSDTRRAAIL 698

  Fly   533 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 597
            :|.|..|.|.....:      ..:.|...|..:.|.:|.:.       :.|.:.:|.:..:|:.:
 Frog   699 SRDVEAEISHLEKEL------RNFGGQMAKFQQRLHSVDKD-------VKENEDILRQYHNSKKQ 750

  Fly   598 ASRRLK--TEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLL 660
            ....|:  :|.:.|.:.:...|..|     .||     |:..|.....|...|....|.|:|.:.
 Frog   751 IQIDLRAFSERIAELENVEEQPSID-----IAT-----LEGEAEENLNKIELVKQEMELTKENMG 805

  Fly   661 N-RLLQKQGSPLDTEALRRLAKITDGYS--GSDLTALAKD------------------------- 697
            | :||.........|..|:::.:::...  ..||..:.::                         
 Frog   806 NLKLLLTMAESNYEEIKRKISSVSEVAEPVKEDLHRIDQEVENCKRHKKHYVDKLKEHLDRIQKR 870

  Fly   698 ----AALEPIRELNVEQVKC-----LDISAMRAITEQDFHSSLKRIRRSVAPQS---------LN 744
                |..|...|:.:.|.||     :::|.    |.:...:.:.|:|..:..:.         :.
 Frog   871 KEEVAGKEQELEVKISQAKCVCPERIEVSR----TARSLDTEITRLREKINSEEVLHGNREEIIK 931

  Fly   745 SYEKWSQDYGDI 756
            .|.:..:.|.|:
 Frog   932 QYHEAKERYQDV 943

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142 18/78 (23%)
P-loop_NTPase 482..>538 CDD:304359 13/55 (24%)
AAA 515..652 CDD:214640 23/138 (17%)
AAA 519..650 CDD:278434 23/132 (17%)
Vps4_C <722..754 CDD:286426 4/40 (10%)
smc6.1XP_004918255.2 Smc 87..1107 CDD:224117 131/727 (18%)
ABC_SMC6_euk <1015..1113 CDD:213243
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165166210
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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