DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and fignl1

DIOPT Version :9

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_001096311.1 Gene:fignl1 / 100124890 XenbaseID:XB-GENE-1000359 Length:656 Species:Xenopus tropicalis


Alignment Length:368 Identity:161/368 - (43%)
Similarity:237/368 - (64%) Gaps:11/368 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   389 ANKSQTLPRNL--GSKTSVGAVQRQPAKTAATPPAVRRQFSSGRNTPPQRSRTPINNNGPSGSGA 451
            :|:.|..|..|  |:|.|:||.:.:.......||..|::       ..|.|...:...|.|...|
 Frog   295 SNQPQRNPSPLYGGAKKSLGAARSRGLHGKFVPPVPRQE-------DVQDSNRKVYGQGNSEMNA 352

  Fly   452 STPVVSVKGVEQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPA 516
            .:. ..:|.:|.|:::||:.||::.|..:.|.||||.:.||..::|:|:.|.:||::|||||.|.
 Frog   353 PSD-ERLKNIEPKMIELIMSEIMDHGPPLNWDDIAGLEFAKTTIKEIVVWPMLRPDIFTGLRGPP 416

  Fly   517 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFI 581
            ||:|||||||.||||:.:.:|.:..|||.:|||:|||||:||:|||:|||||.|||..||::|||
 Frog   417 KGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFI 481

  Fly   582 DEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRV 646
            ||:|||||:|...|||:|||:||||||:.||...:.| |||:|:.|||||||:||||.||..||:
 Frog   482 DEIDSLLSQRGEGEHESSRRIKTEFLVQLDGATTSSD-DRILVVGATNRPQEIDEAARRRLVKRL 545

  Fly   647 YVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQV 711
            |:.||:...|:.::..|:.|:...|..:.:..:....||:||:|:|.|.::|||.|||.:.:..:
 Frog   546 YIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQLMDI 610

  Fly   712 KCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 754
            ..:....:|.|...||.|:...:|.||:.:.|..||.|::.:|
 Frog   611 STITPEQVRPIAYIDFQSAFLVVRPSVSQKDLELYENWNKTFG 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
P-loop_NTPase 482..>538 CDD:304359 31/55 (56%)
AAA 515..652 CDD:214640 88/136 (65%)
AAA 519..650 CDD:278434 84/130 (65%)
Vps4_C <722..754 CDD:286426 11/31 (35%)
fignl1NP_001096311.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 293..354 17/65 (26%)
SpoVK <356..650 CDD:223540 143/294 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1176820at2759
OrthoFinder 1 1.000 - - FOG0001088
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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