DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Miro and RHOT1

DIOPT Version :9

Sequence 1:NP_001262895.1 Gene:Miro / 42845 FlyBaseID:FBgn0039140 Length:673 Species:Drosophila melanogaster
Sequence 2:NP_001028740.1 Gene:RHOT1 / 55288 HGNCID:21168 Length:691 Species:Homo sapiens


Alignment Length:715 Identity:331/715 - (46%)
Similarity:458/715 - (64%) Gaps:87/715 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIPANVTPEQVPTSIVDFSAVEQSED 73
            :|:|||||||:..|||||||:||||||:|||||||||||||||:||||:|||.|||:|..|||::
Human     2 KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDE 66

  Fly    74 ALAAEINKAHVVCIVYAVDDDDTLDRITSHWLPLVRAKCNPSLDGEGDAEAEAEGDTQREPIRKP 138
            .|..||::|:|:||||||::..::|::||.|:||:..:                  |.::. |.|
Human    67 QLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINER------------------TDKDS-RLP 112

  Fly   139 IVLVGNKIDLIEYSTMDSVLAIMEDYPEIESCVECSAKSLHNISEMFYYAQKAVLHPTSPLYMME 203
            ::|||||.||:|||:|:::|.||..|.|||:|||||||:|.||||:||||||||||||.|||..|
Human   113 LILVGNKSDLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPE 177

  Fly   204 EQELTSACKKSLVRIFKICDIDGDNLLNDYELNLFQRRCFNTPLQPQILDEVKAVIQKNVPDGIY 268
            |:|:..||.|:|.|||||.|.|.|..|||.|||.|||.||||||.||.|::||.|::|::.||:.
Human   178 EKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVA 242

  Fly   269 NDAVTLKGFLFLHCLFIQRGRNETTWAVLRRFGYNDQLEMCQEYLRPPLKIPPGSSTELSHRGQQ 333
            :..:|||||||||.|||||||:||||.|||||||:|.|::..|||.|.|||||..:|||:|....
Human   243 DSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYL 307

  Fly   334 FLIAVFERYDRDGDGALSPEEHKMLFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLM 398
            ||.:.|:::|.|.|.||||:|.|.||...|..||  ..|:..:...|| .||:|..|:|.:|||.
Human   308 FLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPW--GPDVNNTVCTNE-RGWITYQGFLSQWTLT 369

  Fly   399 TLIDVVKTMEYLAYLGFNV-HENDSQLAAIHVTRERRIDLAKRQSSRSVYKCHVIGPKGSGKTGM 462
            |.:||.:.:|||.|||::: .|.:||.:|:.|||:::|||.|:|:.|:|::|:|||.|..||:|:
Human   370 TYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGKSGV 434

  Fly   463 CRGFLVEDM--HKLIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQPQEVNCDVACL 525
            .:..|..::  .|.|.::.|:  ...||:|.||||||:|:|.||.   ..:.|...|:.|||.||
Human   435 LQALLGRNLMRQKKIREDHKS--YYAINTVYVYGQEKYLLLHDIS---ESEFLTEAEIICDVVCL 494

  Fly   526 VYDSSNPRSFEYVARIYIKYYAESKIPVMIVGTKCDMDERRQDYLMQPSEFCDKYKLLPPHLFSL 590
            |||.|||:||||.|||:.:::.:|:||.:||..|.|:.|.:|:|.:.|::||.|:|:.||..|:.
Human   495 VYDVSNPKSFEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSISPTDFCRKHKMPPPQAFTC 559

  Fly   591 KT---NKKELYTKLATMAAFP-------------------RFQAAWILF---------------- 617
            .|   ..|:::.||.|||.:|                   ..:..|:..                
Human   560 NTADAPSKDIFVKLTTMAMYPEDHYRDRLSRDMGHTDRIENLRKIWVFLKTAFHARLRCMCTCNR 624

  Fly   618 -----------------YKHRLVQLWESAHLRQFGLMTEDPKLWLKAGLGVAAATMLGFIVLKTI 665
                             .|:::.....:.|:.|..|  :....||:|..|.....:|||.:.|.:
Human   625 CTFCICQNFLNSDLLQSVKNKIFTAVLNRHVTQADL--KSSTFWLRASFGATVFAVLGFAMYKAL 687

  Fly   666  665
            Human   688  687

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MiroNP_001262895.1 Miro1 10..195 CDD:206680 109/184 (59%)
RHO 14..195 CDD:197554 106/180 (59%)
EF_assoc_2 247..328 CDD:285547 50/80 (63%)
EF_assoc_1 367..437 CDD:285546 29/70 (41%)
Miro2 444..620 CDD:206679 74/232 (32%)
Ras 448..602 CDD:278499 66/158 (42%)
RHOT1NP_001028740.1 Miro1 3..169 CDD:206680 109/184 (59%)
RHO 7..169 CDD:197554 106/180 (59%)
EF_assoc_2 221..301 CDD:285547 49/79 (62%)
EF_assoc_1 341..409 CDD:285546 29/70 (41%)
Miro2 415..580 CDD:206679 72/169 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 211 1.000 Domainoid score I2802
eggNOG 1 0.900 - - E2759_KOG1707
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56803
Inparanoid 1 1.050 642 1.000 Inparanoid score I812
Isobase 1 0.950 - 0 Normalized mean entropy S1464
OMA 1 1.010 - - QHG55756
OrthoDB 1 1.010 - - D239599at33208
OrthoFinder 1 1.000 - - FOG0001617
OrthoInspector 1 1.000 - - otm41606
orthoMCL 1 0.900 - - OOG6_101658
Panther 1 1.100 - - O PTHR24072
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2129
SonicParanoid 1 1.000 - - X1026
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.820

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