DRSC/TRiP Functional Genomics Resources

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Protein Alignment Miro and rhot1a

DIOPT Version :9

Sequence 1:NP_001262895.1 Gene:Miro / 42845 FlyBaseID:FBgn0039140 Length:673 Species:Drosophila melanogaster
Sequence 2:XP_009297700.1 Gene:rhot1a / 327143 ZFINID:ZDB-GENE-030131-5354 Length:709 Species:Danio rerio


Alignment Length:734 Identity:341/734 - (46%)
Similarity:467/734 - (63%) Gaps:107/734 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIPANVTPEQVPTSIVDFSAVEQSED 73
            ||:|||||||:..|||||||:||||||:|:|||||||||||||:||||:|||.|||:|..|||::
Zfish     2 RKDVRILLVGEPKVGKTSLIMSLVSEEFPDEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDE 66

  Fly    74 ALAAEINKAHVVCIVYAVDDDDTLDRITSHWLPLVRAKCNPSLDGEGDAEAEAEGDTQREPIRKP 138
            .|..||.||:|:||||:|::..:::::||||:||:..:                  |.::. |.|
Zfish    67 QLYQEITKANVICIVYSVNNKKSIEKVTSHWIPLINER------------------TDKDS-RVP 112

  Fly   139 IVLVGNKIDLIEYSTMDSVLAIMEDYPEIESCVECSAKSLHNISEMFYYAQKAVLHPTSPLYMME 203
            ::|||||.||:|:|:|:::|.||..|.|||:|||||||:|.||||:||||||||||||.|||..|
Zfish   113 LILVGNKSDLVEHSSMETILPIMNQYSEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYSPE 177

  Fly   204 EQELTSACKKSLVRIFKICDIDGDNLLNDYELNLFQRRCFNTPLQPQILDEVKAVIQKNVPDGIY 268
            |:|:..:|.|:|.|||||.|:|.|.:|||.|||.|||.|||.||.||.|::||.|::||:.||:.
Zfish   178 EKEMKPSCIKALTRIFKISDLDNDGILNDNELNFFQRTCFNIPLAPQALEDVKNVVRKNMTDGVK 242

  Fly   269 NDAVTLKGFLFLHCLFIQRGRNETTWAVLRRFGYNDQLEMCQEYLRPPLKIPPGSSTELSHRGQQ 333
            ::.:|||||||||.|||||||:||||.|||||||:|.||:.||||.|..||||..:|||:|....
Zfish   243 DNGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLELTQEYLFPLFKIPPDCTTELNHNAYL 307

  Fly   334 FLIAVFERYDRDGDGALSPEEHKMLFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLM 398
            ||.:||:::|:|.|.||||:|.|.||...|..||  ..|:..:...|| .||:|..|:|.:|||.
Zfish   308 FLQSVFDKHDKDRDCALSPDELKDLFKVFPYMPW--GPDVNNTVCTNE-QGWITYQGYLSQWTLT 369

  Fly   399 TLIDVVKTMEYLAYLGFN-VHENDSQLAAIHVTRERRIDLAKRQSSRSVYKCHVIGPKGSGKTGM 462
            |.:||.:.:|||.|||:: :.|.:||.|||.|||.:||||.|:|:.|||::|:|:|.:|.||:|.
Zfish   370 TYLDVQRCLEYLGYLGYSIIQEQESQAAAITVTRNKRIDLQKKQTQRSVFRCNVLGARGCGKSGF 434

  Fly   463 CRGFLVEDM--HKLIGKEFKTNVVNCINSVQVYGQEKHLILRDI--DVRHALDPLQPQEVNCDVA 523
            .:.||..::  .|.|.::.|:  ...|::..||||||:|:|.::  ||..    |...::.|||.
Zfish   435 LQAFLGRNLVRQKRIREDHKS--YYAISTTYVYGQEKYLLLHEVLPDVEF----LSEADLACDVV 493

  Fly   524 CLVYDSSNPRSFEYVARIYIKYYAESKIPVMIVGTKCDMDERRQDYLMQPSEFCDKYKLLPPHLF 588
            |||||.||||||||.|::|.|::.:||.|.:|:..|.|:.|.||.|.:.|.:||.|:||.||.||
Zfish   494 CLVYDISNPRSFEYCAKVYKKHFMDSKTPCVIIAAKSDLHEARQYYSLSPLDFCRKHKLHPPQLF 558

  Fly   589 SLKTNK---KELYTKLATMAAFP--------------------------------RFQAAWI--- 615
            :..|.:   |:|||||.|||.:|                                :|.:|.:   
Zfish   559 TCNTTEAPSKDLYTKLTTMAMYPHAKLRCMCGCNRCTYCICHNLLNSELVRSVKAKFSSAVLNRL 623

  Fly   616 ------------------LFYKHRLVQLWESA----------------HLRQFGLMTEDPKLWLK 646
                              |.::...|...|.:                |:.|..|  ::...||:
Zfish   624 RPFIQDLGTFLLADEESSLTHQVHAVSFVEDSVFMESSVDPFVPACNRHMTQADL--KNSTFWLR 686

  Fly   647 AGLGVAAATMLGFIVLKTI 665
            |.:|.....:|||.:.|.:
Zfish   687 ASVGATVFAVLGFAMYKAL 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MiroNP_001262895.1 Miro1 10..195 CDD:206680 107/184 (58%)
RHO 14..195 CDD:197554 104/180 (58%)
EF_assoc_2 247..328 CDD:285547 52/80 (65%)
EF_assoc_1 367..437 CDD:285546 32/70 (46%)
Miro2 444..620 CDD:206679 80/235 (34%)
Ras 448..602 CDD:278499 69/160 (43%)
rhot1aXP_009297700.1 Miro1 3..169 CDD:206680 107/184 (58%)
RHO 7..169 CDD:197554 104/180 (58%)
EF_assoc_2 221..301 CDD:285547 51/79 (65%)
EF_assoc_1 341..409 CDD:285546 32/70 (46%)
Miro2 415..582 CDD:206679 76/172 (44%)
Gem1 418..>537 CDD:224025 51/124 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 210 1.000 Domainoid score I2754
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56803
Inparanoid 1 1.050 658 1.000 Inparanoid score I750
OMA 1 1.010 - - QHG55756
OrthoDB 1 1.010 - - D239599at33208
OrthoFinder 1 1.000 - - FOG0001617
OrthoInspector 1 1.000 - - otm24818
orthoMCL 1 0.900 - - OOG6_101658
Panther 1 1.100 - - O PTHR24072
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2129
SonicParanoid 1 1.000 - - X1026
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1414.010

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