DRSC/TRiP Functional Genomics Resources

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Protein Alignment Miro and rhot1

DIOPT Version :9

Sequence 1:NP_001262895.1 Gene:Miro / 42845 FlyBaseID:FBgn0039140 Length:673 Species:Drosophila melanogaster
Sequence 2:XP_031750214.1 Gene:rhot1 / 100492251 XenbaseID:XB-GENE-494893 Length:707 Species:Xenopus tropicalis


Alignment Length:606 Identity:311/606 - (51%)
Similarity:430/606 - (70%) Gaps:33/606 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIPANVTPEQVPTSIVDFSAVEQSED 73
            :|:|||||||:..|||||||:|||.||:|||||.||||||||.:||||:|||.|||:|..||::|
 Frog     2 KKDVRILLVGEPRVGKTSLIMSLVGEEFPEEVPARAEEITIPGDVTPERVPTHIVDYSEAEQTDD 66

  Fly    74 ALAAEINKAHVVCIVYAVDDDDTLDRITSHWLPLVRAKCNPSLDGEGDAEAEAEGDTQREPIRKP 138
            .|..||::|:|:||||||::.:::|::|:||:||:    |...|.:.               |.|
 Frog    67 QLYMEISRANVICIVYAVNNRNSIDKVTNHWIPLI----NERTDKDN---------------RVP 112

  Fly   139 IVLVGNKIDLIEYSTMDSVLAIMEDYPEIESCVECSAKSLHNISEMFYYAQKAVLHPTSPLYMME 203
            ::|||||.||::||:::::|.||..|.|||:|||||||:|.||||:||||||||||||.|||..|
 Frog   113 LILVGNKSDLLDYSSLETILPIMNQYSEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPE 177

  Fly   204 EQELTSACKKSLVRIFKICDIDGDNLLNDYELNLFQRRCFNTPLQPQILDEVKAVIQKNVPDGIY 268
            |:||..||.|:|.|||||.|:|.|.:|||.|||.|||.||:.||.||.|::||.|::|||.||:.
 Frog   178 EKELKPACVKALTRIFKISDMDNDRILNDAELNFFQRICFHIPLAPQALEDVKNVVRKNVLDGVS 242

  Fly   269 NDAVTLKGFLFLHCLFIQRGRNETTWAVLRRFGYNDQLEMCQEYLRPPLKIPPGSSTELSHRGQQ 333
            .:.:|||||||||.|||||||:||||.|||||||:|.||:..|||.|.||:|...:|||:|....
 Frog   243 ANGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLELTPEYLFPQLKVPIDCTTELNHHAYL 307

  Fly   334 FLIAVFERYDRDGDGALSPEEHKMLFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLM 398
            ||.::|:::|:|.|.||||||.|.||...|..||  ..|:..:...|| .||:|..|:|.:|||.
 Frog   308 FLQSIFDKHDQDRDCALSPEELKDLFQVFPYMPW--GPDVNNTVYTNE-KGWITYQGFLSQWTLT 369

  Fly   399 TLIDVVKTMEYLAYLGFNV-HENDSQLAAIHVTRERRIDLAKRQSSRSVYKCHVIGPKGSGKTGM 462
            |.:||.:.:|||.|||::: .|.:||..|:.|||:::|||.|||:.|:|::|:|||.:||||:|:
 Frog   370 TYLDVQRCLEYLGYLGYSILTEQESQAMAVTVTRDKKIDLHKRQTQRNVFRCNVIGSQGSGKSGI 434

  Fly   463 CRGFLVEDM--HKLIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQPQEVNCDVACL 525
            .:..|..::  .|.:.:|.|:  ...||.|.||||||:|:|..|....|   |.|.:..|||.||
 Frog   435 LQSHLGRNLMRQKRVREEHKS--FYAINPVYVYGQEKYLLLHHIVESEA---LSPADTLCDVVCL 494

  Fly   526 VYDSSNPRSFEYVARIYIKYYAESKIPVMIVGTKCDMDERRQDYLMQPSEFCDKYKLLPPHLFSL 590
            :||.:||.||:|.|||:.:::.:|:.|.::|..|.|:.|.:|:..:.|:|||.|:|:.||..|:.
 Frog   495 LYDVANPHSFDYCARIFKQHFMDSRTPCLLVAAKSDLHEVKQESSISPAEFCKKHKMPPPQAFTC 559

  Fly   591 KTNK---KELYTKLATMAAFP 608
            .|.:   :|::.|:.|||.:|
 Frog   560 NTAESPSREIFIKMTTMAMYP 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MiroNP_001262895.1 Miro1 10..195 CDD:206680 105/184 (57%)
RHO 14..195 CDD:197554 102/180 (57%)
EF_assoc_2 247..328 CDD:285547 51/80 (64%)
EF_assoc_1 367..437 CDD:285546 29/70 (41%)
Miro2 444..620 CDD:206679 68/170 (40%)
Ras 448..602 CDD:278499 62/158 (39%)
rhot1XP_031750214.1 Miro1 3..169 CDD:206680 105/184 (57%)
EF_assoc_2 220..303 CDD:400591 53/82 (65%)
EF_assoc_1 341..409 CDD:400590 29/70 (41%)
Miro2 415..581 CDD:206679 68/171 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 205 1.000 Domainoid score I2856
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H56803
Inparanoid 1 1.050 616 1.000 Inparanoid score I882
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D239599at33208
OrthoFinder 1 1.000 - - FOG0001617
OrthoInspector 1 1.000 - - otm48824
Panther 1 1.100 - - O PTHR24072
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1026
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.160

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