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Protein Alignment LSm3 and SMD2
DIOPT Version :10
| Sequence 1: | NP_732931.1 |
Gene: | LSm3 / 42842 |
FlyBaseID: | FBgn0051184 |
Length: | 103 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_013377.1 |
Gene: | SMD2 / 850981 |
SGDID: | S000004265 |
Length: | 110 |
Species: | Saccharomyces cerevisiae |
| Alignment Length: | 81 |
Identity: | 29/81 - (35%) |
| Similarity: | 46/81 - (56%) |
Gaps: | 8/81 - (9%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 18 PLDLIRLSLDEK--VYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAK 80
|:.||..::..: |.:.:||..::..|:.|||:|.||||.:.:|..| |:..:.|. ..:
Yeast 30 PMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWT-----EKKGKNVI-NRE 88
Fly 81 RTIPMLFVRGDGVILV 96
|.|..||:|||.||:|
Yeast 89 RFISKLFLRGDSVIVV 104
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| LSm3 | NP_732931.1 |
LSm3 |
17..98 |
CDD:212477 |
29/81 (36%) |
| SMD2 | NP_013377.1 |
Sm_D2 |
27..108 |
CDD:212467 |
29/81 (36%) |
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