DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment LSm3 and LSM3B

DIOPT Version :9

Sequence 1:	NP_001163707.1	Gene:	LSm3 / 42842	FlyBaseID:	FBgn0051184	Length:	103	Species:	Drosophila melanogaster
Sequence 2:	NP_177812.1	Gene:	LSM3B / 844021	AraportID:	AT1G76860	Length:	98	Species:	Arabidopsis thaliana

Alignment Length:	87	Identity:	69/87 - (79%)
Similarity:	82/87 - (94%)	Gaps:	0/87 - (0%)

- Green bases have known domain annotations that are detailed below.

  Fly    15 VKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTA 79
            |:||||||||||||::|||:|::|||||:||||||||||:|||.|||:||||||:|||||:.:|.
plant     9 VREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTT 73

  Fly    80 KRTIPMLFVRGDGVILVSPPMR 101
            ||||..||||||||||||||:|
plant    74 KRTIEFLFVRGDGVILVSPPLR 95

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
LSm3	NP_001163707.1	LSm3	17..98	CDD:212477	64/80 (80%)
LSM3B	NP_177812.1	LSm3	11..92	CDD:212477	64/80 (80%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	133	1.000	Domainoid score	I1646
eggNOG	1	0.900	-	-		E1_KOG3460
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H6548
Inparanoid	1	1.050	150	1.000	Inparanoid score	I1717
OMA	1	1.010	-	-		QHG54341
OrthoDB	1	1.010	-	-		D1633672at2759
OrthoFinder	1	1.000	-	-		FOG0004431
OrthoInspector	1	1.000	-	-		otm2560
orthoMCL	1	0.900	-	-		OOG6_101597
Panther	1	1.100	-	-	LDO	PTHR13110
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X3139
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	14	13.840