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Protein Alignment LSm3 and snrpd2
DIOPT Version :10
| Sequence 1: | NP_732931.1 |
Gene: | LSm3 / 42842 |
FlyBaseID: | FBgn0051184 |
Length: | 103 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_001005128.1 |
Gene: | snrpd2 / 448710 |
XenbaseID: | XB-GENE-964248 |
Length: | 118 |
Species: | Xenopus tropicalis |
| Alignment Length: | 92 |
Identity: | 32/92 - (34%) |
| Similarity: | 48/92 - (52%) |
Gaps: | 23/92 - (25%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAK 80
||.::..|: :.:|.:..||.::|.||:.|||:|.||||.:.:|..| ||.|:.|
Frog 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT----------EVPKSGK 82
Fly 81 -----------RTIPMLFVRGDGVILV 96
|.|..:|:|||.||:|
Frog 83 GKKKSKPVNKDRYISKMFLRGDSVIVV 109
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| LSm3 | NP_732931.1 |
LSm3 |
17..98 |
CDD:212477 |
32/92 (35%) |
| snrpd2 | NP_001005128.1 |
Sm_D2 |
24..113 |
CDD:212467 |
32/92 (35%) |
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