DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab7 and RABG3d

DIOPT Version :9

Sequence 1:NP_001247276.1 Gene:Rab7 / 42841 FlyBaseID:FBgn0015795 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_175638.1 Gene:RABG3d / 841658 AraportID:AT1G52280 Length:206 Species:Arabidopsis thaliana


Alignment Length:211 Identity:139/211 - (65%)
Similarity:165/211 - (78%) Gaps:9/211 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSGRKKSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVVVNDRVVTMQIWDTA 65
            ||.|::.||||||||||.|||||||||:||::|||||||||||||.||||.::||:.|:||||||
plant     1 MSSRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQIWDTA 65

  Fly    66 GQERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPDHFPFVVLGNKVDLD 130
            |||||||||||||||||||||||||....||.||::||:||||||||.||::|||||||||.|:|
plant    66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130

  Fly   131 ---NRQVSTRRAQQWCQSKNDIPYYETSAKEGINVEMAFQVIAKNALELEAEAEVINDFPDQITL 192
               :|.||.::|:.||.||.:|||:|||||||.||:.||:.|.|||.:.|.|.|..  .||.|.:
plant   131 GGKSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECITKNAFKNEPEEEPY--LPDTIDV 193

  Fly   193 -GSQNNRPGNPDNCQC 207
             |.|..|   ...|:|
plant   194 AGGQQQR---STGCEC 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab7NP_001247276.1 Rab7 9..179 CDD:206655 125/172 (73%)
RAB 9..174 CDD:197555 123/167 (74%)
RABG3dNP_175638.1 Rab7 9..182 CDD:206655 125/172 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 259 1.000 Domainoid score I489
eggNOG 1 0.900 - - E1_KOG0394
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H100564
Inparanoid 1 1.050 278 1.000 Inparanoid score I883
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1172019at2759
OrthoFinder 1 1.000 - - FOG0001661
OrthoInspector 1 1.000 - - otm2572
orthoMCL 1 0.900 - - OOG6_101358
Panther 1 1.100 - - O PTHR47981
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1058
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.830

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