DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab7 and RABA1c

DIOPT Version :9

Sequence 1:NP_001247276.1 Gene:Rab7 / 42841 FlyBaseID:FBgn0015795 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_199387.1 Gene:RABA1c / 834614 AraportID:AT5G45750 Length:216 Species:Arabidopsis thaliana


Alignment Length:195 Identity:73/195 - (37%)
Similarity:121/195 - (62%) Gaps:14/195 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVVVNDRVVTMQIWDTAGQERFQS 72
            |.||:::|||.|||::|::::....||.:.|:|||.:|.|:.:.|:|:|:..||||||||||:::
plant    13 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRA 77

  Fly    73 LGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPDHFPFVVLGNKVDLDNR-QVST 136
            :..|:||||...:||||||..::|:|:::|..|......|    :...:::|||.||.:. .|.|
plant    78 ITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDP----NIVVMLVGNKSDLRHLVAVQT 138

  Fly   137 RRAQQWCQSKNDIPYYETSAKEGINVEMAF--------QVIAKNALELEAEAEVINDFPDQITLG 193
            ..|:.:.: |..:.:.||||.|..|||.||        .:::|.|:|..:|:..:....|:|.:|
plant   139 EDAKSFAE-KESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIG 202

  Fly   194  193
            plant   203  202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab7NP_001247276.1 Rab7 9..179 CDD:206655 68/178 (38%)
RAB 9..174 CDD:197555 66/173 (38%)
RABA1cNP_199387.1 Rab11_like 11..175 CDD:206660 66/166 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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