DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab7 and RASD1

DIOPT Version :9

Sequence 1:NP_001247276.1 Gene:Rab7 / 42841 FlyBaseID:FBgn0015795 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_057168.1 Gene:RASD1 / 51655 HGNCID:15828 Length:281 Species:Homo sapiens


Alignment Length:174 Identity:49/174 - (28%)
Similarity:87/174 - (50%) Gaps:14/174 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVVVNDRVVTMQIWDTAGQERF 70
            |:..:::|||.|.||||:::::::..||.:.|..|| .||..|...:...|..:.|.||:|...|
Human    22 KNCYRMVILGSSKVGKTAIVSRFLTGRFEDAYTPTI-EDFHRKFYSIRGEVYQLDILDTSGNHPF 85

  Fly    71 QSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFL-----IQASPRDPDHFPFVVLGNKVDLD 130
            .::........|..:||:.:...:||:.:...|.:.|     ::...::....|.|:.|||.|.|
Human    86 PAMRRLSILTGDVFILVFSLDNRDSFEEVQRLRQQILDTKSCLKNKTKENVDVPLVICGNKGDRD 150

  Fly   131 -NRQVSTRRAQQWCQSKNDIP----YYETSAKEGINVEMAFQVI 169
             .|:|..|..:|..   .|.|    |:|.|||:..:::..|:.:
Human   151 FYREVDQREIEQLV---GDDPQRCAYFEISAKKNSSLDQMFRAL 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab7NP_001247276.1 Rab7 9..179 CDD:206655 48/171 (28%)
RAB 9..174 CDD:197555 48/171 (28%)
RASD1NP_057168.1 Rhes_like 25..281 CDD:133343 48/171 (28%)
Effector region 53..61 4/8 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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