DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab7 and rab10

DIOPT Version :9

Sequence 1:NP_001247276.1 Gene:Rab7 / 42841 FlyBaseID:FBgn0015795 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_001002566.1 Gene:rab10 / 436839 ZFINID:ZDB-GENE-040718-304 Length:201 Species:Danio rerio


Alignment Length:171 Identity:63/171 - (36%)
Similarity:106/171 - (61%) Gaps:10/171 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVVVNDRVVTMQIWDTAGQERFQS 72
            |.|::::|||.||||.::.::.:..|:..:.:|||.||..|.|.:..:.:.:|||||||||||.:
Zfish     9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHT 73

  Fly    73 LGVAFYRGADCCVLVYDVTAPNSFKNLDSWR---DEFLIQASPRDPDHFPFVVLGNKVDLDNRQV 134
            :..::||||...:||||:|...||:|:..|.   ||...:...|       ::||||.|:::::|
Zfish    74 ITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVER-------MLLGNKCDMEDKRV 131

  Fly   135 STRRAQQWCQSKNDIPYYETSAKEGINVEMAFQVIAKNALE 175
            ..:...:....::.|.::|||||..||:|.||..:|::.|:
Zfish   132 VPKAKGEQIAKEHGIRFFETSAKANINIEKAFLTLAEDILK 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab7NP_001247276.1 Rab7 9..179 CDD:206655 62/170 (36%)
RAB 9..174 CDD:197555 61/167 (37%)
rab10NP_001002566.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 63/171 (37%)
RAB 10..173 CDD:197555 62/170 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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