DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab7 and CG4789

DIOPT Version :9

Sequence 1:NP_001247276.1 Gene:Rab7 / 42841 FlyBaseID:FBgn0015795 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_573166.1 Gene:CG4789 / 32668 FlyBaseID:FBgn0030792 Length:274 Species:Drosophila melanogaster


Alignment Length:239 Identity:48/239 - (20%)
Similarity:92/239 - (38%) Gaps:73/239 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTK-----EVVVNDRVVTMQIWDTAGQE 68
            ::::::|||.||||||.:...:.....:...|:|.:...|     |....:....::::|..|..
  Fly     7 VRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMHPFREGTARECPYFVELFDVGGSL 71

  Fly    69 RFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFL--------------IQASPRDP---- 115
            ..::....||.|.|..:||:|:|...|.:.|..|..|.:              :..||..|    
  Fly    72 NHKNTRSVFYAGIDGIILVHDLTNAKSQRQLIDWLYEIVNKEGKDTNKSNGASMPPSPPSPLSSF 136

  Fly   116 ---------------DHF------PFVVLGNKVD-LDNR---QVSTRR---------AQQ-W--C 143
                           :.|      |.:|:|.|:| ||.:   ::..::         |:: |  |
  Fly   137 STDNLGTDGHILFDMEEFLGATQTPILVMGTKLDLLDEKRHPKMGVKKPGGIADKCGAEEIWLNC 201

  Fly   144 QSKNDIPYYETSA-------------KEGINVEMAFQVIAKNAL 174
            ::...:....|.|             ::.:...:||.|.:.||:
  Fly   202 RNSRSLAAGTTDAVKLSRFFDRVIENRKALRAALAFGVSSSNAV 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab7NP_001247276.1 Rab7 9..179 CDD:206655 48/239 (20%)
RAB 9..174 CDD:197555 47/237 (20%)
CG4789NP_573166.1 P-loop_NTPase 7..228 CDD:304359 43/220 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454527
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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