DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab7 and Rab23

DIOPT Version :9

Sequence 1:NP_001247276.1 Gene:Rab7 / 42841 FlyBaseID:FBgn0015795 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_001153201.1 Gene:Rab23 / 19335 MGIID:99833 Length:237 Species:Mus musculus


Alignment Length:193 Identity:65/193 - (33%)
Similarity:114/193 - (59%) Gaps:11/193 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVVVNDRVVTMQIWDTAGQERFQSL 73
            :|::::|:.:|||:|::.:|....|:..||.|||.||..:::.|||..|.:.:|||||||.|.::
Mouse    10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI 74

  Fly    74 GVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPDHFPFVVLGNKVD-LDNRQVSTR 137
            ..|:||||..||||:..|...||:.:.|||::.:.:..     ..|..::.||:| ||:..:...
Mouse    75 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDDSCIKNE 134

  Fly   138 RAQQWCQSKNDIPYYETSAKEGINVEMAFQVIAKNALELEAEAEVINDFPDQITLGSQNNRPG 200
            .|:...: :..:.:|.||.||.:||...|:.:|:..|: :.:.::..| |:|  ..|.:|:.|
Mouse   135 EAEGLAK-RLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ-KLKQQITED-PEQ--THSSSNKIG 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab7NP_001247276.1 Rab7 9..179 CDD:206655 59/170 (35%)
RAB 9..174 CDD:197555 58/165 (35%)
Rab23NP_001153201.1 Rab23_like 10..169 CDD:133306 58/164 (35%)
Effector region. /evidence=ECO:0000250 38..46 5/7 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 204..237
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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