DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab7 and ARL8A

DIOPT Version :9

Sequence 1:NP_001247276.1 Gene:Rab7 / 42841 FlyBaseID:FBgn0015795 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_620150.1 Gene:ARL8A / 127829 HGNCID:25192 Length:186 Species:Homo sapiens


Alignment Length:181 Identity:44/181 - (24%)
Similarity:84/181 - (46%) Gaps:30/181 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVVVNDRVVTMQIWDTAGQERF 70
            |..:::.::|....|||:.:|...:.:|:.....|:|  |..:::...:  ||:::||..||.||
Human    18 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQPRF 78

  Fly    71 QSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPDH---------FPFVVLGNK 126
            :|:...:.||....|.:.|..            |:..|:||..:..:         .|.:|||||
Human    79 RSMWERYCRGVSAIVYMVDAA------------DQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 131

  Fly   127 VD----LDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVEMAFQVIAKNA 173
            .|    ||.:::..:......|.: :|..|..|.||..|:::..|.:.:::
Human   132 RDLPGALDEKELIEKMNLSAIQDR-EICCYSISCKEKDNIDITLQWLIQHS 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab7NP_001247276.1 Rab7 9..179 CDD:206655 43/178 (24%)
RAB 9..174 CDD:197555 43/178 (24%)
ARL8ANP_620150.1 Arl10_like 22..180 CDD:206724 43/174 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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