DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab7 and plvap

DIOPT Version :9

Sequence 1:NP_001247276.1 Gene:Rab7 / 42841 FlyBaseID:FBgn0015795 Length:207 Species:Drosophila melanogaster
Sequence 2:XP_004911077.1 Gene:plvap / 101730550 XenbaseID:XB-GENE-22068924 Length:366 Species:Xenopus tropicalis


Alignment Length:128 Identity:20/128 - (15%)
Similarity:41/128 - (32%) Gaps:37/128 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 KNLDSWRDEFLIQ----------------ASPRDPDHFPFVVLGNKVDLDNRQVSTRRAQQWCQS 145
            |.|:|...:.:|:                |:.::.|...|.:|..|..::|.........:..:.
 Frog    65 KTLESLNQKQMIEYKGLLMEYGKLNMKFNATAKEKDACRFELLDRKGKMENLTTINSLLNRLIKD 129

  Fly   146 KNDIPYYETSAKEGINVEMAFQVIAKNALELEAEAEVINDFPDQITL------GSQNNRPGNP 202
            |:..            .||...|:.|   ..:.:.:...|...::.:      .:..|.|.||
 Frog   130 KDRA------------CEMNLSVVMK---RFQGDIKTSEDDKKRLEIDLVACRAACRNSPDNP 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab7NP_001247276.1 Rab7 9..179 CDD:206655 15/97 (15%)
RAB 9..174 CDD:197555 15/92 (16%)
plvapXP_004911077.1 PV-1 1..355 CDD:369013 20/128 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0394
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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