DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13604 and Pfrx

DIOPT Version :9

Sequence 1:NP_001262894.1 Gene:CG13604 / 42840 FlyBaseID:FBgn0039137 Length:763 Species:Drosophila melanogaster
Sequence 2:NP_477451.1 Gene:Pfrx / 32938 FlyBaseID:FBgn0027621 Length:716 Species:Drosophila melanogaster


Alignment Length:704 Identity:130/704 - (18%)
Similarity:220/704 - (31%) Gaps:237/704 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 TGALLDRPLKLEPYMSQNFMGFFVAEEDANYLKRLALQYVKEVSNSIISDTYEQLDAIVACFPWC 202
            |..||.||:   |..|..|...:  .:|.......|.......|:|..|.:.....|..|.....
  Fly   101 TPTLLPRPV---PPSSTRFTSSY--NDDLCTCSNCAYSSFSSSSSSASSTSSSSTSATAAGTALA 160

  Fly   203 GAVSSG-TRCIPRS--SRSISLEPHVKSLHLTLAYQFPQAQFNALKALVETLDASCASNWELRLY 264
            .|.:|. .:.:.||  :.||...|:..|..|       :.:..:|..|.:|.|.:..:  ||.:.
  Fly   161 SAAASAVAKKLARSVTATSIMDMPYNTSPSL-------RVRTTSLNQLKKTADLAIEN--ELHVC 216

  Fly   265 SRDPRLATKQVQKVVYPHN---------------------PHETDELELRIGDYIYLNTEVVDSS 308
               |.:.:::::|::.|.:                     ||....:.|......:::.::    
  Fly   217 ---PSVMSEELRKLLPPTSETVMTKPFPIRGERTIADCTTPHVIAMVGLPARGKTFISKKL---- 274

  Fly   309 SDGWAEGISWLTGSTGHLPVNYTERTAESDAWTLHRVVQLSKSVASS-----------------L 356
                |..::|:..||....:....|.| :.|:..|...:.....|.:                 |
  Fly   275 ----ARYLNWIGISTRVFNLGEYRRHA-TTAYKSHEFFRADNEEAMAIRNRCANQALHDSCDWLL 334

  Fly   357 TSAEDLDIVDGRSISTEPDDRQNTAHPDIIEGSSFE--------ESEQSVEKYLRQTLKPCLELP 413
            :....:.:.|..: ||.  ||:...|..:::...|.        :..|.:|:.:.:     :::.
  Fly   335 SGQGSIAVFDATN-STR--DRRQLIHDIVVKQHGFRLFFVESICDDPQIIEQNILE-----VKVS 391

  Fly   414 SVQLLNSHNLTHQHNPNTPTIEITTNMSSSSTSMSKQPVDEILVEPPAAQPPRPDDTLSVHSDHS 478
            |...||.         ||..:...............||:||:           .:..||....::
  Fly   392 SPDYLNM---------NTELVVRDFLQRIEHYEERYQPIDEV-----------TESHLSFMKVYN 436

  Fly   479 L--------HPGSLDAS--------HAKNRKIYIMRHGERVDFTFGTWIPYCFDEFGNYMRKDLN 527
            .        :.|.:::.        |...|.||:.||||                      .:.|
  Fly   437 AGKKVVVYNNEGHVESRIVYYLMNIHITPRTIYLTRHGE----------------------SEYN 479

  Fly   528 MPKTLPRRKNSPEGWQNDSPLTNVGVYQANLIGQALLEAQVQIDHVYCSPSYRCIQTCTSALEGL 592
            :...:          ..||.|:..|...||.:...:  ||.|||                     
  Fly   480 LSGLI----------GGDSNLSARGHQYANALSTFI--AQQQID--------------------- 511

  Fly   593 KLTGKQKIKLEPGLFEWMAWYPSGVPD----------WLTKNELTEAKFDVDLDYEPVQP--ASE 645
                        ||..|.:|....:..          |...||: :|....::.||.::.  ..|
  Fly   512 ------------GLRVWTSWMKRAIQTVADVKAPQERWKALNEI-DAGHCEEMTYEQIKEKFPEE 563

  Fly   646 LTAR----------LKESTEQFYERNHDVILQLLEQTTGNILVVAH--------ATTLDTCSRQL 692
            ..||          ..||.|....|...||::|..|  ||:|||:|        |..||..:.:|
  Fly   564 FKARDVNKFAYRYPRGESYEDLVARLEPVIMELERQ--GNVLVVSHQAVLRCLFAYFLDKSADEL 626

  Fly   693 TGGVPRSTNELRQVIHKIPYCSLATVEQVDGVWKLVEPECLPV----THSKNPR 742
                |.....|..||...|......||.:.          ||:    ||...|:
  Fly   627 ----PYLYVPLHTVIKLTPVAYGCKVEHIK----------LPIDAVDTHRPKPK 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13604NP_001262894.1 UBA_UBS3B 23..60 CDD:270486
SH3_UBASH3 275..333 CDD:212725 9/78 (12%)
His_Phos_1 494..728 CDD:278716 56/263 (21%)
PfrxNP_477451.1 6PF2K 254..465 CDD:279872 35/247 (14%)
AAA_33 256..412 CDD:290396 25/181 (14%)
His_Phos_1 468..651 CDD:278716 56/256 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0406
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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