DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluProRS and Pars2

DIOPT Version :9

Sequence 1:NP_524471.2 Gene:GluProRS / 42834 FlyBaseID:FBgn0005674 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_001077356.1 Gene:Pars2 / 230577 MGIID:2386296 Length:511 Species:Mus musculus


Alignment Length:322 Identity:67/322 - (20%)
Similarity:113/322 - (35%) Gaps:90/322 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1246 GCYILRQWSF-AIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIADFAPEVAW-VTKS 1308
            |||.|..::. |:.|.::. .|.|:..:|                .:|.::...:|...| .|..
Mouse   122 GCYHLMPYTVRAVEKLVRV-IDQEMQAIG----------------GQKINMPSLSPAELWRATSR 169

  Fly  1309 GDSDLAEPIAVR----------PTSETVMYPAYAKWVQ-SYRDLPIRLNQWNNVVRWEFKQPTP- 1361
            .|....|.:.:|          ||.|..:....|...: ||:.||:.|.|   |.|....:|.| 
Mouse   170 WDLMGRELLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSYKQLPLLLYQ---VTRKFRDEPRPR 231

  Fly  1362 --FLRTREFLWQEGHTAFADKEEAAKEVLDIL-DLYALVY---------------------THLL 1402
              .||.|||..::.:| |....|||:|...:: |.|..::                     :|..
Mouse   232 FGLLRGREFYMKDMYT-FDSSSEAAQETYGLVCDAYCRLFDRLGLQWMKARADVGSIGGTMSHEF 295

  Fly  1403 AIPVVKGR-------------KTE----KEKF---AGGDYTTTVEAFISASGRAIQGATSHHLGQ 1447
            .:||..|.             .||    .:|.   ..|..|.|         :.|:...:.:|..
Mouse   296 QLPVDIGEDRLVVCPSCHFSANTEILDLSQKICPDCQGPLTET---------KGIEVGHTFYLST 351

  Fly  1448 NFSKMFEIVYEDPETQQKKYVYQNSWGI-TTRTIGVMIMVHADNQGLVLPPHVACIQAIVVP 1508
            .:|.:|..::.:.. .:........:|: .||.:...|.|.:....:..|..:|..|..|:|
Mouse   352 KYSSIFNALFTNAH-GESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVIP 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluProRSNP_524471.2 PLN02907 1..715 CDD:215492
GST_C_GluProRS_N 76..153 CDD:198342
tRNA-synt_1c 203..508 CDD:279135
tRNA-synt_1c_C 510..688 CDD:281883
WHEP-TRS 748..799 CDD:278865
WHEP-TRS 821..870 CDD:278865
WHEP-TRS 894..945 CDD:278865
WEPRS_RNA 973..1022 CDD:238473
WHEP-TRS 1050..1100 CDD:278865
WHEP-TRS 1122..1168 CDD:278865
PRK08661 1220..1714 CDD:236327 67/322 (21%)
ProRS_core_arch_euk 1224..1486 CDD:238401 61/298 (20%)
ProRS_anticodon_zinc 1492..1714 CDD:238439 5/17 (29%)
Pars2NP_001077356.1 PRK09194 78..506 CDD:236405 67/322 (21%)
ProRS_core_prok 101..390 CDD:238402 61/298 (20%)
ProRS_anticodon_short 405..506 CDD:238438 3/8 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0442
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.