DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluProRS and qars-1

DIOPT Version :9

Sequence 1:NP_524471.2 Gene:GluProRS / 42834 FlyBaseID:FBgn0005674 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_001255843.1 Gene:qars-1 / 178415 WormBaseID:WBGene00001336 Length:786 Species:Caenorhabditis elegans


Alignment Length:716 Identity:206/716 - (28%)
Similarity:320/716 - (44%) Gaps:96/716 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 LLVCHSNNDVLRALAR--AAPDYKLYGETAIERTQIDHWLSFSLTCEDDISWALSFLDKSIAPV- 108
            |:|.:..||.::...:  ||.:|.|  ...::..|:.   .|..:|...:...:..::.::..| 
 Worm    68 LVVKYIMNDGIKTEPQLSAAIEYLL--SHTVKGIQVP---DFEKSCGVGVVVTIDDIEAAVTKVI 127

  Fly   109 ----TYLVANKLTIADFALFNEMHSRYEFLAAKGIPQHVQ-RWYDLI---TAQPLIQKVLQSLPE 165
                ..:||.:.:.....|..|:.:...:.......:.|. |:.:|:   ||:.|..|..:..||
 Worm   128 GQHREKIVAERYSFPAGKLLGELRALLPWADGAITKKEVDLRFLELLGPKTAEDLAPKKKEKKPE 192

  Fly   166 DAKVKR---------SPQSSKEQTPA--------------------KTGER-KQEGKFVDLPGAE 200
            ..|..:         ..::.||.:|.                    |.||. ||:|.......||
 Worm   193 GPKPSKDAAAAATAPGTKNQKEASPEEFADGAETMDELLRTRAHFHKVGENFKQDGYVTTPKTAE 257

  Fly   201 M---------GKVVVRFPPEASGYLHIGHAKAALLNQYYALAFQGTLIMRFDDTNPAKETVEFEN 256
            :         ||||.|||||.:|.||||||||..:|..||.|..|...:|||||||.||..:|.:
 Worm   258 LLKAHVAAVGGKVVTRFPPEPNGVLHIGHAKAININFGYAKAMGGVCNLRFDDTNPEKEEEKFFS 322

  Fly   257 VILGDLEQLQIKPDVFTHTSNYFDLMLDYCVRLIKESKAYVDDTPPEQMKLEREQRVESANRSNS 321
            .|...:..|...|...||:|:.|..:..:.|:||::..|:|.....|:|:....|.  |..|...
 Worm   323 AIEDIVHWLGYDPARVTHSSDNFQQLYLWAVKLIQKGLAFVCHQKVEEMRGFEVQL--SPWRERP 385

  Fly   322 VEKNLSLWEEMVKGSEKGQKYCVRAKIDMSSPNGCMRDPTIYRCKNEPHPRTGTKYKVYPTYDFA 386
            :|:|:.|:|:|..|.....:..:|.|:.:....   .||..||.|..||.|||.::.:|||||:.
 Worm   386 IEENIQLFEDMKNGKFDEGEATLRLKLTLEEGK---VDPVAYRIKYVPHHRTGNQWCIYPTYDYT 447

  Fly   387 CPIVDAIENVTHTLRTTEYHDRDDQFYWFIDALKLRKPYIWSYSRLNMTNTVLSKRKLTWFVDSG 451
            ..:.|:|||:||:|.|.|:..|...:||..:||.:..|..|.|.|||:..||:||||:...:.:.
 Worm   448 HCLCDSIENITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKILKLITTK 512

  Fly   452 LVDGWDDPRFPTVRGIIRRGMTVEGLKEFIIAQGSSKSVVFMNWDKIWAFNKKVIDPIAPRYTA- 515
            .|:.|||||..|:..:.|||:..|.:..|:...|.:.|.:.::...:.|..:..::..|||..| 
 Worm   513 TVNDWDDPRLFTLTALRRRGIPSEAINRFVAKLGLTMSQMVIDPHVLDATVRDYLNIHAPRTMAV 577

  Fly   516 LEKEKRVIVNVAGAKV-ERIQVSVHPKDESLGKK-TVLLGPRIYI---DYVDAEALKE-----GE 570
            ||..|..|.|.:...: ..:.|...|.|.:..:| :|.:...|:|   ||...::.|.     .:
 Worm   578 LEGLKLTIENFSELNLPSSVDVPDFPSDPTDPRKHSVSVDREIFIEKSDYKPDDSDKSFRRLTPK 642

  Fly   571 NATFINWGNILIRKVN--KDASGNITSVDA-ALNLENKDFKKTLKLTWLAVEDDPSAYPPTFCV- 631
            .|..:....:::|.|.  |||.|::|.|.. |..|..||..|.. :.|:|        .|..|. 
 Worm   643 QAVGLKHIGLVLRFVKEVKDAEGHVTEVVVKAEKLSEKDKPKAF-IHWVA--------KPVSCEV 698

  Fly   632 -YFDNIISKAVLGKDEDFKQFIGHKTRDEVP--------MLGDPELKKCKKGDIIQLQRRGFFKV 687
             .:|.:....   ..||.:...|....|..|        .|.|..:.|.|..|..|.:|.|||.|
 Worm   699 RLYDRLFKSK---NPEDAQLVPGGFLSDINPDSLTVVYNALIDQSIAKSKVYDRFQFERIGFFCV 760

  Fly   688 D 688
            |
 Worm   761 D 761

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluProRSNP_524471.2 PLN02907 1..715 CDD:215492 206/716 (29%)
GST_C_GluProRS_N 76..153 CDD:198342 12/85 (14%)
tRNA-synt_1c 203..508 CDD:279135 113/304 (37%)
tRNA-synt_1c_C 510..688 CDD:281883 53/201 (26%)
WHEP-TRS 748..799 CDD:278865
WHEP-TRS 821..870 CDD:278865
WHEP-TRS 894..945 CDD:278865
WEPRS_RNA 973..1022 CDD:238473
WHEP-TRS 1050..1100 CDD:278865
WHEP-TRS 1122..1168 CDD:278865
PRK08661 1220..1714 CDD:236327
ProRS_core_arch_euk 1224..1486 CDD:238401
ProRS_anticodon_zinc 1492..1714 CDD:238439
qars-1NP_001255843.1 PLN02859 1..785 CDD:178450 206/716 (29%)
tRNA_synt_1c_R1 7..159 CDD:282424 16/95 (17%)
tRNA_synt_1c_R2 162..262 CDD:282423 21/99 (21%)
GlnRS_core 269..573 CDD:185676 114/308 (37%)
tRNA-synt_1c_C 571..761 CDD:281883 53/201 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D111937at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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