DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluProRS and ears-2

DIOPT Version :9

Sequence 1:NP_524471.2 Gene:GluProRS / 42834 FlyBaseID:FBgn0005674 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_499917.2 Gene:ears-2 / 176860 WormBaseID:WBGene00001338 Length:481 Species:Caenorhabditis elegans


Alignment Length:411 Identity:85/411 - (20%)
Similarity:152/411 - (36%) Gaps:95/411 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 LPGAEMGKVVVRFPPEASGYLHIGHAKAALLNQYYALAFQGTLIMRFDDTNPAKETVEFENVILG 260
            |.|.....|.|||.|..:|:||||..:.|..|..:|..:.|..|:|.:||:..:...:.::.|..
 Worm     3 LTGFLKQNVRVRFAPSPTGHLHIGGLRTAFFNYLFAKKYGGDFILRIEDTDRTRFVDDAQDQIYS 67

  Fly   261 DLEQLQIKPDVFTHTSNYF---------DLMLDYCVRLIKESKAYVDDTPPEQMKLEREQRVESA 316
            .|....:.||........|         ::..:...|||....||.......::.|.|    ::|
 Worm    68 SLNFYNLLPDEGPREGGKFGPYEQSKRLEIYRNAAYRLIDSGHAYRCFCSENRLDLLR----KTA 128

  Fly   317 NRSNSVEK------NLSLWEEMVKGSEKGQKYCVRAKID----------MSSPNGCM--RDPTIY 363
            .:...:.|      |||. .:.||..:.|:|:.:|.|:|          ..|.|..:  .||.:.
 Worm   129 EKRGEIPKYDRKCANLSS-RDAVKMEQNGEKFVIRFKLDKQNVQFHDEVFGSVNQFIDESDPVLL 192

  Fly   364 RCKNEPHPRTGTKYKVYPTYDFACPIVDAIENVTHTLRTTEYHDRDDQFYWFIDALK---LRKPY 425
            :...            :|||..|..|.|....::|.:|..|         |.....|   |.|.:
 Worm   193 KSDG------------FPTYHLANVIDDRKMEISHVIRGME---------WLSSTGKHTILYKAF 236

  Fly   426 IWSYSR-------LNMTNTVLSKRKLTWFV--------------------DSGLVDGWDDPRFPT 463
            .|:..:       :......||||....||                    :...:..:|...|.:
 Worm   237 NWTPPKFVHLSLIMRSATKKLSKRDKDAFVSYYSEQLGALPEAVLNLMIRNGAGIRNFDAEHFYS 301

  Fly   464 VRGIIRR-GMTVEGLKEFIIAQGSSKSVVFMNWDKIWAFNKKVIDPIAPRYTALEKEKRVIVNVA 527
            :..:|.: .:::.|.:..::     .|.|...:.:: ||.|.....:.||...:..:|.   |.:
 Worm   302 LDEMIEQFDLSLLGRRNLLL-----DSDVLQKYSRM-AFQKSDFKELYPRIIDILNKKS---NYS 357

  Fly   528 GAK--VERIQVSVHPKDESLG 546
            .::  :::|...:..|:|:.|
 Worm   358 TSREDIQKIVTFLKAKEENFG 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluProRSNP_524471.2 PLN02907 1..715 CDD:215492 85/411 (21%)
GST_C_GluProRS_N 76..153 CDD:198342
tRNA-synt_1c 203..508 CDD:279135 75/362 (21%)
tRNA-synt_1c_C 510..688 CDD:281883 8/39 (21%)
WHEP-TRS 748..799 CDD:278865
WHEP-TRS 821..870 CDD:278865
WHEP-TRS 894..945 CDD:278865
WEPRS_RNA 973..1022 CDD:238473
WHEP-TRS 1050..1100 CDD:278865
WHEP-TRS 1122..1168 CDD:278865
PRK08661 1220..1714 CDD:236327
ProRS_core_arch_euk 1224..1486 CDD:238401
ProRS_anticodon_zinc 1492..1714 CDD:238439
ears-2NP_499917.2 gltX 9..475 CDD:234953 83/405 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0008
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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