DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12268 and FAR1

DIOPT Version :9

Sequence 1:NP_001247272.1 Gene:CG12268 / 42833 FlyBaseID:FBgn0039131 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_197642.1 Gene:FAR1 / 832311 AraportID:AT5G22500 Length:491 Species:Arabidopsis thaliana


Alignment Length:512 Identity:138/512 - (26%)
Similarity:239/512 - (46%) Gaps:84/512 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ESDIAKFYANKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRT--KKGVDPSVRKEQYFKCV 74
            ||:..:|..|||||||||.||:.||||||:||...::..||||:|.  :|.....:|.| ..:..
plant     2 ESNCVQFLGNKTILITGAPGFLAKVLVEKILRLQPNVKKIYLLLRAPDEKSAMQRLRSE-VMEID 65

  Fly    75 IFGKLLEKNPG-------IVDKVRVVKGDLLEPDLGLSAND-TNTLASNVEVVFHCAANVRFDQP 131
            :| |:|..|.|       :.:|:..|.||:...:|||...| ...:.|.::::.:.||...||:.
plant    66 LF-KVLRNNLGEDNLNALMREKIVPVPGDISIDNLGLKDTDLIQRMWSEIDIIINIAATTNFDER 129

  Fly   132 LRPMVMMNVVGTLKVLRLAEKMSQLQALVHVSTSYCQCNE-SVLEERAYPAPQ------------ 183
            ....:.:|..|.|.||..|:|..:.|.|:||||:|....: .:|.|:.:...:            
plant   130 YDIGLGINTFGALNVLNFAKKCVKGQLLLHVSTAYISGEQPGLLLEKPFKMGETLSGDRELDINI 194

  Fly   184 ------------NPFSIIEMVETMDDEALAEITPKLLNGLPNTYAYSKALSEDLICRYNNKLPII 236
                        ...|..|:.:||.|..:|...   |:|.||||.::||:.|.|:.:|...||::
plant   195 EHDLMKQKLKELQDCSDEEISQTMKDFGMARAK---LHGWPNTYVFTKAMGEMLMGKYRENLPLV 256

  Fly   237 ITRPSIVTAAIHEPLPGWIEGVNGPTGLMIGAARGVIRSMHCNPDYASTVIPVDKAINGMILCGY 301
            |.||:::|:.|.||.||||||:.....:::...:|.::....:.:....:||.|..:|.|:    
plant   257 IIRPTMITSTIAEPFPGWIEGLKTLDSVIVAYGKGRLKCFLADSNSVFDLIPADMVVNAMV---- 317

  Fly   302 QRGKASQEKGNKQTGVE-FCNLCISSKALMSWGDSIETGRRFFYETPLSFALWYP----GGSIKK 361
              ..|:...|:  ||:: ..::..|.|..:::|...:...|:|.:.||......|    .|:|..
plant   318 --AAATAHSGD--TGIQAIYHVGSSCKNPVTFGQLHDFTARYFAKRPLIGRNGSPIIVVKGTILS 378

  Fly   362 NYYHHLFCVIFFHYLPAYFIDFWLLVFGQKPF-----LLNVQRKVSMGLKLLQYY---------- 411
            ........:...:.||...:....:|:   |:     ..::.||:.:.::|::.|          
plant   379 TMAQFSLYMTLRYKLPLQILRLINIVY---PWSHGDNYSDLSRKIKLAMRLVELYQPYLLFKGIF 440

  Fly   412 ---TTKRWEF-RNERFQEMSSQLSLLDQDLFDTSVGQVNWETYISN-YIVGMRTYIL 463
               .|:|... |.|..:|:...        |:.....::|:.||:| :|.|:.|::|
plant   441 DDLNTERLRMKRKENIKELDGS--------FEFDPKSIDWDNYITNTHIPGLITHVL 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12268NP_001247272.1 PLN02996 12..463 CDD:215538 137/510 (27%)
FAR-N_SDR_e 22..347 CDD:187547 107/360 (30%)
FAR_C 372..463 CDD:176924 21/110 (19%)
FAR1NP_197642.1 PLN02996 1..490 CDD:215538 138/512 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1010.020

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