DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12268 and FAR6

DIOPT Version :9

Sequence 1:NP_001247272.1 Gene:CG12268 / 42833 FlyBaseID:FBgn0039131 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001326776.1 Gene:FAR6 / 824837 AraportID:AT3G56700 Length:548 Species:Arabidopsis thaliana


Alignment Length:512 Identity:126/512 - (24%)
Similarity:216/512 - (42%) Gaps:101/512 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IAKFYANKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRTKKGVDPSVRKEQYFKCV---IF 76
            |.:|...|:.|:||||||:.|||:|||||...::..|:||:|:|.  ..|..|..|.:.:   :|
plant    77 IVRFLEGKSYLVTGATGFLAKVLIEKLLRESLEIGKIFLLMRSKD--QESANKRLYDEIISSDLF 139

  Fly    77 GKLLEKNPG------IVDKVRVVKGDLLEPDLGLSANDTNTLASNVEVVFHCAANVRFDQPLRPM 135
             |||::..|      :..|:..|.||:.|.:||:.:...|.::..::|:..|.....||......
plant   140 -KLLKQMHGSSYEAFMKRKLIPVIGDIEEDNLGIKSEIANMISEEIDVIISCGGRTTFDDRYDSA 203

  Fly   136 VMMNVVGTLKVLRLAEKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEMVETMDDEAL 200
            :.:|.:|..::|...:...:|:..:|.||:|      |..:|.....:.|..|.|.: |.|....
plant   204 LSVNALGPGRLLSFGKGCRKLKLFLHFSTAY------VTGKREGTVLETPLCIGENI-TSDLNIK 261

  Fly   201 AEITPKLLN--------------------------GLPNTYAYSKALSEDLICRYNNKLPIIITR 239
            :|:  ||.:                          |..|:|.::||:.|.:|......||::|.|
plant   262 SEL--KLASEAVRKFRGREEIKKLKELGFERAQHYGWENSYTFTKAIGEAVIHSKRGNLPVVIIR 324

  Fly   240 PSIVTAAIHEPLPGWIEGVNGPTGLMIGAARGVIRSMHCNPDYASTVIPVDKAINGMILCGYQRG 304
            |||:.::.:||.||||:|......:::..|:|.|.....:|.....:||||...|..|....:.|
plant   325 PSIIESSYNEPFPGWIQGTRMADPIILAYAKGQISDFWADPQSLMDIIPVDMVANAAIAAMAKHG 389

  Fly   305 KASQEKGNKQTGVEFCNLCISSKA-LMSWGDSIETGRRFFYETPLSFALWYPGGSIKKNYYHHLF 368
            ....|       .:..||..||.. .|..|..|:...:...:.||...                 
plant   390 CGVPE-------FKVYNLTSSSHVNPMRAGKLIDLSHQHLCDFPLEET----------------- 430

  Fly   369 CVIFFHYLPAYFIDFWLLVFGQKPFLLNV---QRKV---------SMGLKLLQYYTT--KRWE-- 417
             ||...::..:     ..:.|....|.|.   |.:|         :.|.:.|.|:.:  |.:|  
plant   431 -VIDLEHMKIH-----SSLEGFTSALSNTIIKQERVIDNEGGGLSTKGKRKLNYFVSLAKTYEPY 489

  Fly   418 ------FRNERFQEMSSQLSLLDQDLFDTSVGQVNWETYISN-YIVGMRTYILGESE 467
                  |.|.....:..::|:.::..|...:..::||.||.| ::.|::...|.:.:
plant   490 TFFQARFDNTNTTSLIQEMSMEEKKTFGFDIKGIDWEHYIVNVHLPGLKKEFLSKKK 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12268NP_001247272.1 PLN02996 12..463 CDD:215538 125/506 (25%)
FAR-N_SDR_e 22..347 CDD:187547 99/360 (28%)
FAR_C 372..463 CDD:176924 20/113 (18%)
FAR6NP_001326776.1 PLN02996 77..539 CDD:215538 125/503 (25%)
FAR-N_SDR_e 84..426 CDD:187547 99/360 (28%)
FAR_C <471..539 CDD:176924 15/67 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.930

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