DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12268 and FAR8

DIOPT Version :9

Sequence 1:NP_001247272.1 Gene:CG12268 / 42833 FlyBaseID:FBgn0039131 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_190042.2 Gene:FAR8 / 823581 AraportID:AT3G44560 Length:496 Species:Arabidopsis thaliana


Alignment Length:524 Identity:131/524 - (25%)
Similarity:229/524 - (43%) Gaps:103/524 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ESDIAKFYANKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRT--KKGVDPSVRKEQYFKCV 74
            |.....|..|||||:||||||:.||.|||:||...::|.:||::|.  .:.....:|.|.:.|.:
plant     2 EFSCVHFLQNKTILVTGATGFLAKVFVEKILRVQPNVNKLYLVVRASDNEAATKRLRTEAFEKDL 66

  Fly    75 IFGKLLEKNPG-------IVDKVRVVKGDLLEPDLGL-SANDTNTLASNVEVVFHCAANVRFDQP 131
            .  |:|..|.|       :.:||..|.||:....||: .:|....:...:::|.:.||...||:.
plant    67 F--KVLRDNLGDEKLNTLLSEKVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAATTNFDER 129

  Fly   132 LRPMVMMNVVGTLKVLRLAEKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEM----- 191
            ....:.:|..|.|.||..|:|..:.|.|:||||:|      |..|:....|:.||.:.|:     
plant   130 YDIGLGINTFGALNVLNFAKKCVKAQLLLHVSTAY------VCGEKPGLLPEKPFVMEEICNENG 188

  Fly   192 ---------------VETMDDEALAE-----------ITPKLLNGLPNTYAYSKALSEDLICRYN 230
                           ::.::::..:|           :....|:|.||||.::|::.|.|:..:.
plant   189 LQLDINLERELMKQRLKELNEQGCSEEGTTFYMKELGMERAKLHGWPNTYVFTKSMGEMLLGNHK 253

  Fly   231 NKLPIIITRPSIVTAAIHEPLPGWIEGVNGPTGLMIGAARGVIRSMHCNPDYASTVIPVDKAING 295
            ..||::|.||:::|:.:.||.||||||:.....::|...:||::....:.:....:||.|...|.
plant   254 ENLPLVIIRPTMITSTLFEPFPGWIEGLRTVDSVIIAYGKGVLKCFLVDVNSVCDMIPADMVANA 318

  Fly   296 MILCG------------YQRGKASQEK---GNKQTGVEFCNLCISSKALMSWGDSIETGRRFFYE 345
            ||...            ||.|.:.|..   |..:. :.||....:|....: |..|...:.....
plant   319 MIAAAATHAGGSKVHMVYQVGSSHQNPIIYGEIRE-ILFCYFTKNSLRSRN-GSMITVSKMKLIP 381

  Fly   346 TPLSFALWYPGGSIKKNYYHHLFCVIFFHYLPAYFIDFWLLVFGQK--PFLLNVQRKVSMGLKLL 408
            |...|:|:                :...:.||...:....:::..:  ....|..||:.|.::|:
plant   382 TLALFSLY----------------MTIRYKLPVQLLKLVDIIYPSREGDEYKNKNRKIDMVMRLV 430

  Fly   409 QYY-------------TTKRWEFRNERFQEMSSQLSLLDQDLFDTSVGQVNWETYISN-YIVGMR 459
            :.|             .||....:.:.....:|:..:.|   ||..:  :.|:.|:.| :|.|:.
plant   431 KLYEPYVLFKGIFDDRNTKNLCAKQKEEDNRNSENFMFD---FDPKI--IKWKDYLINVHIPGLI 490

  Fly   460 TYIL 463
            |::|
plant   491 THVL 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12268NP_001247272.1 PLN02996 12..463 CDD:215538 130/522 (25%)
FAR-N_SDR_e 22..347 CDD:187547 104/380 (27%)
FAR_C 372..463 CDD:176924 20/106 (19%)
FAR8NP_190042.2 PLN02996 1..495 CDD:215538 131/524 (25%)
FAR-N_SDR_e 12..362 CDD:187547 101/358 (28%)
Sterile 394..495 CDD:281068 21/106 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.930

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