DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12268 and MS2

DIOPT Version :9

Sequence 1:NP_001247272.1 Gene:CG12268 / 42833 FlyBaseID:FBgn0039131 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_187805.1 Gene:MS2 / 820372 AraportID:AT3G11980 Length:616 Species:Arabidopsis thaliana


Alignment Length:528 Identity:125/528 - (23%)
Similarity:211/528 - (39%) Gaps:118/528 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IAKFYANKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRTKKGVDPSVR-KEQYFKCVIFGK 78
            |..|...|..||||:|||:.|||:||:||...|::.|||||:.|.......| |.:.....:|..
plant   124 IISFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERLKNEVLDAELFNT 188

  Fly    79 LLEKNPG-----IVDKVRVVKGDLLEPDLGLSANDTNTLASNVEVVFHCAANVRFDQPLRPMVMM 138
            |.|.:..     ::.|:..|.|::.:.::||.|:....:|..|:|:.:.|||..|::.....:.:
plant   189 LKETHGASYMSFMLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINSAANTTFNERYDVALDI 253

  Fly   139 NVVGTLKVLRLAEKMSQLQALVHVSTSY------------------CQCNESVLE---------- 175
            |..|...::..|:|..:|:..:.|||:|                  |...|:.||          
plant   254 NTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFSMGDCIATENFLEGNRKALDVDR 318

  Fly   176 ------ERAYPAPQNPFSIIEMVETMDDEALAEITPKLLNGLPNTYAYSKALSEDLICRYNNKLP 234
                  |.|....||.    :..:.|.|..|.....   .|..:||.::||:.|.:|......:|
plant   319 EMKLALEAARKGTQNQ----DEAQKMKDLGLERARS---YGWQDTYVFTKAMGEMMINSTRGDVP 376

  Fly   235 IIITRPSIVTAAIHEPLPGWIEGVNGPTGLMIGAARGVIRSMHCNPDYASTVIPVDKAINGMILC 299
            ::|.|||::.:...:|.|||:||......:::...:|.:.....:|.....|:|.|..:|..:..
plant   377 VVIIRPSVIESTYKDPFPGWMEGNRMMDPIVLCYGKGQLTGFLVDPKGVLDVVPADMVVNATLAA 441

  Fly   300 GYQRGKASQEKGNKQTGVEFCNLCISSKALMSWGDSIETGRRFFYETPLSF----ALWYPGGSIK 360
            ..:.|.|..:...:....:     |:|.|:                .||.|    .|.|      
plant   442 IAKHGMAMSDPEPEINVYQ-----IASSAI----------------NPLVFEDLAELLY------ 479

  Fly   361 KNYYHHLFC------------VIFFHYLPAYFIDFWL-------LVFGQKPFLLNVQRKVSMGLK 406
             |:|....|            :..|:.:..:....|.       |:.|    :.:|..|:...||
plant   480 -NHYKTSPCMDSKGDPIMVRLMKLFNSVDDFSDHLWRDAQERSGLMSG----MSSVDSKMMQKLK 539

  Fly   407 LL---------------QYYTTKRWEFRNERFQEMSSQLSLLDQDLFDTSVGQVNWETYISN-YI 455
            .:               :.||.....|.|...|.:...:|..::..|...||.:||..||:| :|
plant   540 FICKKSVEQAKHLATIYEPYTFYGGRFDNSNTQRLMENMSEDEKREFGFDVGSINWTDYITNVHI 604

  Fly   456 VGMRTYIL 463
            .|:|.::|
plant   605 PGLRRHVL 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12268NP_001247272.1 PLN02996 12..463 CDD:215538 124/526 (24%)
FAR-N_SDR_e 22..347 CDD:187547 89/364 (24%)
FAR_C 372..463 CDD:176924 25/113 (22%)
MS2NP_187805.1 PLN02503 1..616 CDD:215279 125/528 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.930

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