DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12268 and FAR2

DIOPT Version :9

Sequence 1:NP_001247272.1 Gene:CG12268 / 42833 FlyBaseID:FBgn0039131 Length:531 Species:Drosophila melanogaster
Sequence 2:XP_011519049.1 Gene:FAR2 / 55711 HGNCID:25531 Length:535 Species:Homo sapiens


Alignment Length:531 Identity:182/531 - (34%)
Similarity:282/531 - (53%) Gaps:41/531 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SDIAKFYANKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRTKKGVDPSVRKEQYFKCVIFG 77
            |.||.||..|:|||||||||:||||:|||.|:..||.|||:|:|.|.|.....|..|.....:|.
Human    22 STIAAFYGGKSILITGATGFLGKVLMEKLFRTSPDLKVIYILVRPKAGQTLQQRVFQILDSKLFE 86

  Fly    78 KLLEKNPGIVDKVRVVKGDLLEPDLGLSANDTNTLASNVEVVFHCAANVRFDQPLRPMVMMNVVG 142
            |:.|..|.:.:|:|.:..||.:.|..:|..|...|.|...::|||||.||||..||..|.:||..
Human    87 KVKEVCPNVHEKIRAIYADLNQNDFAISKEDMQELLSCTNIIFHCAATVRFDDTLRHAVQLNVTA 151

  Fly   143 TLKVLRLAEKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEMVETMDDEALAEITPKL 207
            |.::|.:|.:|.:|:|.:|:||:|..||...::|..||.|..|..||:.:|.:||..:.||||||
Human   152 TRQLLLMASQMPKLEAFIHISTAYSNCNLKHIDEVIYPCPVEPKKIIDSLEWLDDAIIDEITPKL 216

  Fly   208 LNGLPNTYAYSKALSEDLICRYNNKLPIIITRPSIVTAAIHEPLPGWIEGVNGPTGLMIGAARGV 272
            :...||.|.|:|||.|.::.:.:..|.|.|.|||||.|...||.|||::.:|||.|::|...:|.
Human   217 IRDWPNIYTYTKALGEMVVQQESRNLNIAIIRPSIVGATWQEPFPGWVDNINGPNGIIIATGKGF 281

  Fly   273 IRSMHCNPDYASTVIPVDKAINGMILCGY----QRGKASQ----EKGNKQTGVEFCNLCISSKAL 329
            :|::...|...:.|||||..:|.|:..|:    .|.|::.    ..||...    ||        
Human   282 LRAIKATPMAVADVIPVDTVVNLMLAVGWYTAVHRPKSTLVYHITSGNMNP----CN-------- 334

  Fly   330 MSWG----DSIETGRRFFYETPLSFALWYPGGSIKKNYYHHLFCVIFFHYLPAYFIDFWLLVFGQ 390
              |.    ..:.|..:..:|.|..    .|..:...|.:...:.....|..||...|.:|.:.|:
Human   335 --WHKMGVQVLATFEKIPFERPFR----RPNANFTSNSFTSQYWNAVSHRAPAIIYDCYLRLTGR 393

  Fly   391 KPFLLNVQRKVSMGLKLLQYYTTKRWEFRNERFQEMSSQLSLLDQDLFDTSVGQVNWETYISNYI 455
            ||.:..:..::...:.:|:|:..:.||:.....:.:.|:||..||.:|:..|.|:||..||.||:
Human   394 KPRMTKLMNRLLRTVSMLEYFINRSWEWSTYNTEMLMSELSPEDQRVFNFDVRQLNWLEYIENYV 458

  Fly   456 VGMRTYILGESEDTLPQARKVLRRLYILDWVSKVLFFSLSFWFL----------WTHLDGFVERS 510
            :|::.|:|.|....:|:|::.|:||..:.::.....|.:::..|          |..:..|..:.
Human   459 LGVKKYLLKEDMAGIPKAKQRLKRLRNIHYLFNTALFLIAWRLLIARSQMARNVWFFIVSFCYKF 523

  Fly   511 DAFIRSSLSTI 521
            .::.|:| ||:
Human   524 LSYFRAS-STL 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12268NP_001247272.1 PLN02996 12..463 CDD:215538 167/461 (36%)
FAR-N_SDR_e 22..347 CDD:187547 131/336 (39%)
FAR_C 372..463 CDD:176924 28/90 (31%)
FAR2XP_011519049.1 PLN02996 22..467 CDD:215538 167/462 (36%)
FAR-N_SDR_e 31..335 CDD:187547 128/317 (40%)
Sterile 377..467 CDD:281068 28/89 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165157506
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
65.750

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