DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12268 and Far2

DIOPT Version :9

Sequence 1:NP_001247272.1 Gene:CG12268 / 42833 FlyBaseID:FBgn0039131 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001334445.1 Gene:Far2 / 330450 MGIID:2687035 Length:515 Species:Mus musculus


Alignment Length:525 Identity:188/525 - (35%)
Similarity:289/525 - (55%) Gaps:29/525 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SDIAKFYANKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRTKKGVDPSVRKEQYFKCVIFG 77
            |.||.||:||:|||||||||:||||:|||.|:...|.|||:|:|.|.|.....|..|.....:|.
Mouse     2 SMIAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSKLFE 66

  Fly    78 KLLEKNPGIVDKVRVVKGDLLEPDLGLSANDTNTLASNVEVVFHCAANVRFDQPLRPMVMMNVVG 142
            |:.|..|.:.:|:|.:..||.:.|..:|..|...|.|...::|||||.||||..||..|.:||..
Mouse    67 KVKEVCPNVHEKIRPISADLNQRDFAISKEDVQELLSCTNIIFHCAATVRFDAHLREAVQLNVTA 131

  Fly   143 TLKVLRLAEKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEMVETMDDEALAEITPKL 207
            |.::|.:|.:|.:|:|.:|:||::..||.|.::|..||.|..|..||:.:|.:||..:.||||||
Mouse   132 TQQLLLMASQMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIIDSMEWLDDSIIEEITPKL 196

  Fly   208 LNGLPNTYAYSKALSEDLICRYNNKLPIIITRPSIVTAAIHEPLPGWIEGVNGPTGLMIGAARGV 272
            :...||||.|:|||.|.::.:.:..|.:.|.|||||.|...||.|||::.:|||:||:|...:|.
Mouse   197 IGDRPNTYTYTKALGEIVVQQESGNLNVAIVRPSIVGATWQEPFPGWVDNLNGPSGLIIATGKGF 261

  Fly   273 IRSMHCNPDYASTVIPVDKAINGMILCGY----QRGKASQEKGNKQTGVEFCNLCISSKALMSWG 333
            :||:...|...:.|||||..:|..|..|:    .|.|::....:....:..||.......:::  
Mouse   262 LRSIKATPMAVADVIPVDTVVNLTIAVGWYTAVHRPKSTLIYHSTSGNLNPCNWYKMGLQVLA-- 324

  Fly   334 DSIETGRRFFYETPLSFALWYPGGSI-KKNYYHHLFCVIFFHYLPAYFIDFWLLVFGQKPFLLNV 397
             :||       :.|...|...|.... ..|:..|.:..: .|.:||...||:|.:.|:||.:|.:
Mouse   325 -TIE-------KIPFESAFRRPNADFTTSNFTTHYWNTV-SHRVPAIIYDFYLRLTGRKPRMLKL 380

  Fly   398 QRKVSMGLKLLQYYTTKRWEFRNERFQEMSSQLSLLDQDLFDTSVGQVNWETYISNYIVGMRTYI 462
            ..::...:.:|:|:....||:.....:.:.|:||..||.:|:..|.|:||..||.||::|::.|:
Mouse   381 MNRLLKTISMLEYFINHSWEWSTNNTEMLLSELSPEDQRVFNFDVRQLNWLEYIENYVLGVKKYL 445

  Fly   463 LGESEDTLPQARKVLRRLYILDWVSKVLFFSLSFWFL-----------WTHLDGFVERSDAFIRS 516
            |.|....:|:|::.||||..:.::.....| |..|.|           |..:..|..:..::.|:
Mouse   446 LKEDLAGIPKAKQHLRRLRNIHYLFNTALF-LIIWRLLIARSQMARNVWFFIVSFCYKFISYFRA 509

  Fly   517 SLSTI 521
            | ||:
Mouse   510 S-STL 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12268NP_001247272.1 PLN02996 12..463 CDD:215538 170/454 (37%)
FAR-N_SDR_e 22..347 CDD:187547 129/328 (39%)
FAR_C 372..463 CDD:176924 30/90 (33%)
Far2NP_001334445.1 FAR-N_SDR_e 11..315 CDD:187547 126/303 (42%)
Sterile 357..447 CDD:397244 30/89 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847929
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.750

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