DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12268 and CG4020

DIOPT Version :9

Sequence 1:NP_001247272.1 Gene:CG12268 / 42833 FlyBaseID:FBgn0039131 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001259264.1 Gene:CG4020 / 31522 FlyBaseID:FBgn0029821 Length:494 Species:Drosophila melanogaster


Alignment Length:492 Identity:160/492 - (32%)
Similarity:271/492 - (55%) Gaps:11/492 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IAKFYANKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRTKKGVDPSVRKEQYFKCVIFGKL 79
            |.:.:.::.|.:|||:||:||.|:|||||||..|..||:|:|.|||.....|.:..::..::.:|
  Fly     3 IPEAFEDQEIFVTGASGFVGKALIEKLLRSCPKLGRIYVLMRPKKGHTIEERLQLQWESRLYERL 67

  Fly    80 LEKNPGIVDKVRVVKGDLLEPDLGLSANDTNTLASNVEVVFHCAANVRFDQPLRPMVMMNVVGTL 144
            ..:.|....|:..:.||:.:..||:.:.|...| .||.:|:|.||:||||..|...:::|..||.
  Fly    68 RREQPNARSKLVAIAGDVEQLGLGIGSADLERL-RNVNIVYHSAASVRFDDALSTAILLNTRGTH 131

  Fly   145 KVLRLAEKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEMVETMDDEALAEITPKLLN 209
            ::::||.:..:|:|.|||||:|.......:|||.||...:..:.|::.||.|.|.|.....|..|
  Fly   132 ELVKLALEWPKLKAFVHVSTTYSNPGVLEVEERVYPPLADWRTTIKLAETYDAEILDIFNLKYGN 196

  Fly   210 GLPNTYAYSKALSEDLICRYNNKLPIIITRPSIVTAAIHEPLPGWIEGVNGPTGLMIGAARGVIR 274
            ..||||.::|:|:|.::..|.::|||.|.|||||.:.|.||:|||.:..||||||::....|::|
  Fly   197 FQPNTYTFTKSLAEQVVNEYRDRLPIFIFRPSIVVSTIEEPVPGWADNFNGPTGLLVACGVGILR 261

  Fly   275 SMHCNPDYASTVIPVDKAINGMILCGYQRGKASQEKGNKQTGVEFCNLCISSKALMSWGDSIETG 339
            |.:|:|:..:..:|.|.....:|...|:....|:.:. |.:.:...|...::.:.::.|:.|:.|
  Fly   262 SQNCDPNIVADFVPADIVARTLITSVYKFMGESKSRA-KDSDLYVVNCATANISPITMGEVIDIG 325

  Fly   340 RRFFYETPLSFALWYPGGSIKKNYYHHL--FCVIFFHYLPAYFIDFWLLVFGQKPFLLNVQRKVS 402
            :.|..:.|....||.|||.:......|.  ||.:  |.|.|..:|..|.::.:||||:.:||::.
  Fly   326 KTFIRKNPFEKTLWLPGGGMTTCPVLHFVRFCTM--HLLMAIVVDTLLRLYNEKPFLMKLQRRIF 388

  Fly   403 MGLKLLQYYTTKRWEFRNERFQEMSSQLSLLDQDLFD-TSVGQVNWETYISNYIVGMRTYILGES 466
            .....||.:....|.|:|:.|:.:...:...:...|. .....:|:..:..:.|.|.:.::|.||
  Fly   389 AAFSALQVFAMTEWHFQNDNFRALHDVVPANEVSNFGFMQHANINYTEFFQHGIRGAKEFLLKES 453

  Fly   467 EDTLPQARKVLRRLYILDWVSKVLFFS----LSFWFL 499
            .::...||..::..|:||::.:.:.:|    |.|.||
  Fly   454 PESSSAARFRVKIFYVLDFLCRGIVYSFLLRLIFRFL 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12268NP_001247272.1 PLN02996 12..463 CDD:215538 147/450 (33%)
FAR-N_SDR_e 22..347 CDD:187547 116/324 (36%)
FAR_C 372..463 CDD:176924 21/91 (23%)
CG4020NP_001259264.1 FAR-N_SDR_e 12..333 CDD:187547 116/322 (36%)
FAR_C 359..450 CDD:176924 21/92 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466742
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
Isobase 1 0.950 - 0.712175 Normalized mean entropy S3219
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
1110.850

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