DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12268 and far1

DIOPT Version :9

Sequence 1:NP_001247272.1 Gene:CG12268 / 42833 FlyBaseID:FBgn0039131 Length:531 Species:Drosophila melanogaster
Sequence 2:XP_017948360.1 Gene:far1 / 100038270 XenbaseID:XB-GENE-973776 Length:518 Species:Xenopus tropicalis


Alignment Length:536 Identity:188/536 - (35%)
Similarity:289/536 - (53%) Gaps:49/536 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IAKFYANKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRTKKGVDPSVRKEQYFKCVIFGKL 79
            |.:||..|.:|||||||||||||:|||||||.::..:|:|:|.|....|..|..:...|.:|.:|
 Frog     4 IPEFYRGKNVLITGATGFMGKVLLEKLLRSCPNVKAVYVLVRPKASQKPRERVAEMMSCKLFDRL 68

  Fly    80 LEKNPGIVDKVRVVKGDLLEPDLGLSANDTNTLASNVEVVFHCAANVRFDQPLRPMVMMNVVGTL 144
            .::.|....||..:..:|.:|:|.||..|.:.|...:::||||||.|||::.||..:.:||:.|.
 Frog    69 RDEQPECAQKVIAISSELTQPELDLSKEDQDMLIDCIDIVFHCAATVRFNESLRDAMQLNVIATR 133

  Fly   145 KVLRLAEKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEMVETMDDEALAEITPKLLN 209
            ::|.||:|:.:|:..:||||:|..||...:||..||.|.:|..:||.:|.|||..:.:|||||:.
 Frog   134 QLLYLAQKIKKLEVFIHVSTAYANCNRKQIEEMVYPPPVDPKKLIESLEWMDDGLVNDITPKLIG 198

  Fly   210 GLPNTYAYSKALSEDLICRYNNKLPIIITRPSIVTAAIHEPLPGWIEGVNGPTGLMIGAARGVIR 274
            ..||||.|:|||:|.::.:..:||.|.|.|||||.|:..||.||||:..|||:||.|.|.:|::|
 Frog   199 DRPNTYTYTKALAEYVVQQEGSKLNIAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILR 263

  Fly   275 SMHCNPDYASTVIPVDKAINGMILCGYQRGKASQEKGNKQTGVEFCNLCISSKALMSWGD----S 335
            :|..:.:..:.:||||..:|..:...:..|   ..:.::...:...|..........||:    .
 Frog   264 TMRASNNAVADLIPVDVVVNTTLAAAWYSG---VNRYSRPRNILVYNCTTGGTNPFHWGEVEYHV 325

  Fly   336 IETGRRFFYETPLSFALWYPGGSIKKNY--YHHLFCVIFFHYLPAYFIDFWLLVFGQKPFLLNVQ 398
            |.|    |...||..|...|..::..|:  ||:...|  .|..||:..|.:|.:.|:.|.::...
 Frog   326 IST----FKRNPLEQAFRRPNVNLTSNHLLYHYWIAV--SHKAPAFLYDVYLRITGRSPRMMKTI 384

  Fly   399 RKVSMGLKLLQYYTTKRWEFRNERFQEMSSQLSLLDQDLFDTSVGQVNWETYISNYIVGMRTYIL 463
            .::...:.||:|:|:..|.:.||....:.||||..|:..|:..|.|::|..|:.||.:|.:.|:|
 Frog   385 TRLHKAMMLLEYFTSNSWVWNNENTNMLMSQLSPDDKKAFNFDVRQLHWAEYMENYCMGTKKYVL 449

  Fly   464 GESEDTLPQARKVLRR-----------LYILDW---------VSKVLFF--SLSFWFLWTHLDGF 506
            .|....||.|||.|.:           |.:|.|         ...:.:|  |:.|.||       
 Frog   450 NEEMSGLPAARKHLNKLRNIRYGFNTILVVLIWRVFIARSQMARNIWYFVVSMCFKFL------- 507

  Fly   507 VERSDAFIRSSLSTIY 522
                 ::.|:|.:..|
 Frog   508 -----SYFRASSTMRY 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12268NP_001247272.1 PLN02996 12..463 CDD:215538 169/453 (37%)
FAR-N_SDR_e 22..347 CDD:187547 130/328 (40%)
FAR_C 372..463 CDD:176924 28/90 (31%)
far1XP_017948360.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.020

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