DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gdh and GDH2

DIOPT Version :9

Sequence 1:NP_524470.4 Gene:Gdh / 42832 FlyBaseID:FBgn0001098 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_010066.1 Gene:GDH2 / 851311 SGDID:S000002374 Length:1092 Species:Saccharomyces cerevisiae


Alignment Length:569 Identity:117/569 - (20%)
Similarity:185/569 - (32%) Gaps:179/569 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LAKALPTAVMQSSRGYATEHQIPDRLKDVPTAKDPRFFD----MVEYFFHRGCQIA---EESLVD 78
            |.|..|....|....|..:. ||:...|:...|....|:    ...:|..|...|:   :.||| 
Yeast   486 LEKVEPFKNDQEFEAYLNKF-IPNDSPDLLILKTLNIFNKSILKTNFFITRKVAISFRLDPSLV- 548

  Fly    79 DMKGKLTRDEKKQKVKGILMLMQPCDHIIEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKGGIR- 142
                 :|:.|..:...||..::                 ||     .::..|...:...:|||| 
Yeast   549 -----MTKFEYPETPYGIFFVV-----------------GN-----TFKGFHIRFRDIARGGIRI 586

  Fly   143 --------FSLDVSR--DEVKALSALMTFKCACVDVPFGGAKAGLKINP------------KEYS 185
                    :.|:...  ||...|::....|..  |:|.||:|..:.:||            .:|.
Yeast   587 VCSRNQDIYDLNSKNVIDENYQLASTQQRKNK--DIPEGGSKGVILLNPGLVEHDQTFVAFSQYV 649

  Fly   186 EHEL-----EKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTIGHLD-INAHA 244
            :..:     :.:...:...|.|:..:..|     ||.||.               |.:| ...||
Yeast   650 DAMIDILINDPLKENYVNLLPKEEILFFG-----PDEGTA---------------GFVDWATNHA 694

  Fly   245 CV----------TGKPINQGGI-HGRVSATGRGV------FHGLENFINEANYMSQIGTTPGWGG 292
            .|          |||..:.||| |.....|..||      .:...|..|...|..|.|...|..|
Yeast   695 RVRNCPWWKSFLTGKSPSLGGIPHDEYGMTSLGVRAYVNKIYETLNLTNSTVYKFQTGGPDGDLG 759

  Fly   293 KTFIVQGFGNVGLHTTRYLTRAGATCIGVIEHDGTLYNPEGIDP----------KLLEDYKNE-- 345
            ...|:             |:......:.:::..|.|.:|:|:|.          |::.|:...  
Yeast   760 SNEIL-------------LSSPNECYLAILDGSGVLCDPKGLDKDELCRLAHERKMISDFDTSKL 811

  Fly   346 -----------------HGTIVG----YQNAKPYEGENLMF-EKCDIFIPAAVE---------KV 379
                             :||||.    ::|.  :..:...| :..|||:|....         ..
Yeast   812 SNNGFFVSVDAMDIMLPNGTIVANGTTFRNT--FHTQIFKFVDHVDIFVPCGGRPNSITLNNLHY 874

  Fly   380 ITSENANRIQAKIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLN----- 439
            ...|...:.:...|.|.||...|..|...|.:...::..|...|.||||.|..|.|.:|.     
Yeast   875 FVDEKTGKCKIPYIVEGANLFITQPAKNALEEHGCILFKDASANKGGVTSSSMEVLASLALNDND 939

  Fly   440 --HVSYGRLTFKYERESNYHLLASVQQSIERIINDESVQESLERRFGRV 486
              |...|.::  .||.:.|.......||        .:|::.|..||::
Yeast   940 FVHKFIGDVS--GERSALYKSYVVEVQS--------RIQKNAELEFGQL 978

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GdhNP_524470.4 GdhA 98..560 CDD:223411 97/485 (20%)
ELFV_dehydrog_N 104..233 CDD:280903 27/156 (17%)
NAD_bind_1_Glu_DH 254..552 CDD:133445 62/290 (21%)
GDH2NP_010066.1 Bac_GDH 1..1092 CDD:421780 117/569 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344914
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0334
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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