DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gdh and GDH3

DIOPT Version :10

Sequence 1:NP_524470.4 Gene:Gdh / 42832 FlyBaseID:FBgn0001098 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_009339.1 Gene:GDH3 / 851237 SGDID:S000000058 Length:457 Species:Saccharomyces cerevisiae


Alignment Length:442 Identity:118/442 - (26%)
Similarity:187/442 - (42%) Gaps:75/442 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 SLVDDMKGKLTRDEKKQKVKGILMLMQPCDHIIEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKG 139
            |.|:|.|    ..||..:.|.:|.::...:.||:.......|.|..|:..|||.|.::.|.|.||
Yeast    16 SSVEDSK----IFEKFPQYKKVLPIVSVPERIIQFRVTWENDNGEQEVAQGYRVQFNSAKGPYKG 76

  Fly   140 GIRFSLDVSRDEVKALSALMTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLELAKKG 204
            |:||...|:...:|.|.....||.|...:..||.|.||.::.|..|::|:.:|...|..||::  
Yeast    77 GLRFHPSVNLSILKFLGFEQIFKNALTGLDMGGGKGGLCVDLKGKSDNEIRRICYAFMRELSR-- 139

  Fly   205 FIGPGVDVPAPDMGTGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFH 269
            .||...||||.|:|.|.||:.::...|.......:    ..:|||.:|.||...|..|||.|:.:
Yeast   140 HIGKDTDVPAGDIGVGGREIGYLFGAYRSYKNSWE----GVLTGKGLNWGGSLIRPEATGFGLVY 200

  Fly   270 GLENFINEANYMSQIGTTPGWGGKTFIVQGFGNVGLHTTRYLTRAGATCIGVIEHDGTLYNPEGI 334
            ..:..|:.|....:     .:.||...:.|.|||..:....:...|...:.:.:..|.:.:..||
Yeast   201 YTQAMIDYATNGKE-----SFEGKRVTISGSGNVAQYAALKVIELGGIVVSLSDSKGCIISETGI 260

  Fly   335 DP-------------KLLEDYKNEHGT--------IVGYQNAKPYEGENLMFEKCDIFIPAAVEK 378
            ..             |.||:..:|:.|        :.|   |:|:    ......||.:|.|.:.
Yeast   261 TSEQIHDIASAKIRFKSLEEIVDEYSTFSESKMKYVAG---ARPW----THVSNVDIALPCATQN 318

  Fly   379 VITSENANRIQA---KIIAEAANGPTTPAADKILIDRN---------ILVIPDLYINAGGVTVSF 431
            .::.:.|..:.|   |.:||.||..:||.|..:.....         :...|....|.|||.||.
Yeast   319 EVSGDEAKALVASGVKFVAEGANMGSTPEAISVFETARSTATNAKDAVWFGPPKAANLGGVAVSG 383

  Fly   432 FEWLKNLNHVSYGRLTFKYERESNYHLLASVQQSIERII----ND--ESVQE 477
            .|..:|..     ::|:..||         |.|.:::|:    ||  ::.||
Yeast   384 LEMAQNSQ-----KVTWTAER---------VDQELKKIMINCFNDCIQAAQE 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GdhNP_524470.4 GdhA 54..560 CDD:440103 118/442 (27%)
GDH3NP_009339.1 PRK09414 4..454 CDD:181834 118/442 (27%)

Return to query results.
Submit another query.