DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gdh and AT1G51720

DIOPT Version :9

Sequence 1:NP_524470.4 Gene:Gdh / 42832 FlyBaseID:FBgn0001098 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_001323112.1 Gene:AT1G51720 / 841597 AraportID:AT1G51720 Length:637 Species:Arabidopsis thaliana


Alignment Length:523 Identity:121/523 - (23%)
Similarity:207/523 - (39%) Gaps:96/523 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYHLKSLARQGARRQQELATLAKALPTAVMQSSRGYATEHQIPDRLKDVPTAKDPRFFDMVEYFF 65
            :.|.::|..|.|.:.:.:......:.| ||..|.|...|..:         .:||...:.|    
plant   162 LLHKEALRLQTASKDKIVVDKPIYVKT-VMSKSAGSIVEGAL---------KRDPNEIEFV---- 212

  Fly    66 HRGCQIAEESLVDDMKGKLTRDEKKQKVKGILMLMQPCDHIIEIAFPLRRDAGNYEMITGYRAQH 130
                |..:|| |..::..:.::  ...|..:..|::| :.:|....|...|.|...:..|:|.|.
plant   213 ----QSVQES-VHALERVIAKN--SHYVNIMERLLEP-ERMIVFRVPWIDDRGETHVNRGFRVQF 269

  Fly   131 STHKTPTKGGIRFSLDVSRDEVKALSALMTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRR 195
            :....|.:|||||...::....|.|....|.|.|......|||..|...:||..|::|:.:..:.
plant   270 NQALGPCRGGIRFHPSMNLSIAKFLGFQQTLKNALSPYKLGGASGGSDFDPKGKSDNEIMRFCQS 334

  Fly   196 FTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRV 260
            |..|:.:  ::||..|:|:.::|.|.|||.::...|.:..|..    ....||..|.......|.
plant   335 FMNEMYR--YMGPDKDLPSEEVGVGTREMGYLFGQYRRLAGQF----QGSFTGPRIYWAASSLRT 393

  Fly   261 SATGRGVFHGLENFINEANYMSQIGTTPGWGGKTFIVQGFGNVGLHTTRYLTRAGATCIGVIEHD 325
            .|:|.||.:.....:.:.|...:        |...:|.|.|.:.:|....|...||..:.|.:..
plant   394 EASGYGVVYFARLILADMNKEIK--------GLRCVVSGCGKIAMHVVEKLIACGAHPVTVSDSK 450

  Fly   326 GTLYNPEGID-------------PKLLEDYKNEHGTIVGYQNAKPYEGENLMFEKCDIFIPAAVE 377
            |.|.:.:|.|             .:.|.||...:.....:...||:.      |:||:..|.|.:
plant   451 GYLVDDDGFDYMKLAFLRDIKSQQRSLRDYSKTYARAKYFDELKPWN------ERCDVAFPCASQ 509

  Fly   378 KVITSENA-NRIQA--KIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLN 439
            ..:...:| |.:.|  :::.|.:|.|.|..|..:....|:|:.|.:...||||.....|.|    
plant   510 NEVDQADAINLVNAGCRLLVEGSNMPCTAEAVDVFRKANVLIAPAIAAGAGGVAAGEIEVL---- 570

  Fly   440 HVSYGRLTFKYERESNYHLLASVQQSIERIINDESVQESLERRFGRVGGRIPVTPSESFQKRISG 504
                        ||||     |:|.|.|..  :..:||:|:               ::::|.:..
plant   571 ------------RESN-----SMQWSAEDF--ESRLQEALK---------------QTYEKALKA 601

  Fly   505 ASE 507
            |::
plant   602 AND 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GdhNP_524470.4 GdhA 98..560 CDD:223411 103/426 (24%)
ELFV_dehydrog_N 104..233 CDD:280903 38/128 (30%)
NAD_bind_1_Glu_DH 254..552 CDD:133445 59/270 (22%)
AT1G51720NP_001323112.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0334
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54967
OrthoDB 1 1.010 - - D692851at2759
OrthoFinder 1 1.000 - - FOG0001473
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100455
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.690

Return to query results.
Submit another query.