DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gdh and glud1

DIOPT Version :9

Sequence 1:NP_524470.4 Gene:Gdh / 42832 FlyBaseID:FBgn0001098 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_001011138.1 Gene:glud1 / 496554 XenbaseID:XB-GENE-1009691 Length:540 Species:Xenopus tropicalis


Alignment Length:509 Identity:360/509 - (70%)
Similarity:430/509 - (84%) Gaps:14/509 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 DPRFFDMVEYFFHRGCQIAEESLVDDMKGKLTRDEKKQKVKGILMLMQPCDHIIEIAFPLRRDAG 118
            ||.||.|||.||.||..|.|:.||:|::.:.|.::|:.:|:|||.:::||:|::.::||::||.|
 Frog    45 DPNFFKMVEGFFDRGAGIVEDKLVEDLRTRETEEQKRLRVRGILRIIKPCNHVLSVSFPIKRDNG 109

  Fly   119 NYEMITGYRAQHSTHKTPTKGGIRFSLDVSRDEVKALSALMTFKCACVDVPFGGAKAGLKINPKE 183
            .:|:|.|||||||.|:||.|||||:|.:||.||||||::|||:|||.|||||||||||:|||.:.
 Frog   110 EWEVIEGYRAQHSQHRTPCKGGIRYSTEVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINTRN 174

  Fly   184 YSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTIGHLDINAHACVTG 248
            ||:.||||||||||:|||||||||||:|||||||.||||||||||||||.|||:.||||||||||
 Frog   175 YSDAELEKITRRFTIELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYANTIGYTDINAHACVTG 239

  Fly   249 KPINQGGIHGRVSATGRGVFHGLENFINEANYMSQIGTTPGWGGKTFIVQGFGNVGLHTTRYLTR 313
            |||:|||||||:||||||||||:|||||||:||||:|.|||:|.|||::|||||||||:.|||.|
 Frog   240 KPISQGGIHGRISATGRGVFHGIENFINEASYMSQLGMTPGFGDKTFVIQGFGNVGLHSMRYLHR 304

  Fly   314 AGATCIGVIEHDGTLYNPEGIDPKLLEDYKNEHGTIVGYQNAKPYEGENLMFEKCDIFIPAAVEK 378
            .||.|:|:.|.|||::||.|||||.|||||.:||||||:..|:||:| |::...|||.||||.||
 Frog   305 FGAKCVGIGEIDGTIWNPNGIDPKELEDYKLQHGTIVGFPKAQPYDG-NILEADCDILIPAASEK 368

  Fly   379 VITSENANRIQAKIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSY 443
            .:|..||::|:||||||.|||||||.||||.::|||:||||||:||||||||:||||||||||||
 Frog   369 QLTKSNAHKIKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSY 433

  Fly   444 GRLTFKYERESNYHLLASVQQSIERIINDESVQESLERRFGRVGGRIPVTPSESFQKRISGASEK 508
            |||||||||:||||||.             ||||||||:||:.||.|||.|:..||.||||||||
 Frog   434 GRLTFKYERDSNYHLLM-------------SVQESLERKFGKHGGSIPVVPTAEFQARISGASEK 485

  Fly   509 DIVHSGLDYTMERSARAIMKTAMKYNLGLDLRTAAYVNSIEKIFTTYRDAGLAF 562
            |||||||.||||||||.||:||||||||||||||||||:|||:|..|.:|||.|
 Frog   486 DIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFKVYNEAGLTF 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GdhNP_524470.4 GdhA 98..560 CDD:223411 335/461 (73%)
ELFV_dehydrog_N 104..233 CDD:280903 95/128 (74%)
NAD_bind_1_Glu_DH 254..552 CDD:133445 217/297 (73%)
glud1NP_001011138.1 GdhA 86..528 CDD:223411 334/455 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 300 1.000 Domainoid score I1420
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55885
Inparanoid 1 1.050 752 1.000 Inparanoid score I560
OMA 1 1.010 - - QHG54967
OrthoDB 1 1.010 - - D217293at33208
OrthoFinder 1 1.000 - - FOG0001473
OrthoInspector 1 1.000 - - oto104463
Panther 1 1.100 - - LDO PTHR11606
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1737
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.080

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