DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gdh and gdh1

DIOPT Version :9

Sequence 1:NP_524470.4 Gene:Gdh / 42832 FlyBaseID:FBgn0001098 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_588184.1 Gene:gdh1 / 2539147 PomBaseID:SPCC622.12c Length:451 Species:Schizosaccharomyces pombe


Alignment Length:382 Identity:106/382 - (27%)
Similarity:164/382 - (42%) Gaps:56/382 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 EKKQKVKGILMLMQPCDHIIEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKGGIRFSLDVSRDEV 152
            |...::|.:|.::...:.::|.......|.||..:.||||.|.::...|.|||:||...|:...:
pombe    27 EVHPELKRVLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSIL 91

  Fly   153 KALSALMTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDM 217
            |.|.....||.|...:|.||.|.|...:||..|::|:.:.::.|..:|.:  :|||..||||.|:
pombe    92 KFLGFEQIFKNALTGLPMGGGKGGSDFDPKGKSDNEIRRFSQAFMRQLFR--YIGPQTDVPAGDI 154

  Fly   218 G-TGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENFINEANYM 281
            | ||...|....: |.:    |.......||||.:..||.:.|..|||.||.:.:::.|..    
pombe   155 GVTGFVVMHMFGE-YKR----LRNEYSGVVTGKHMLTGGSNIRPEATGYGVVYYVKHMIEH---- 210

  Fly   282 SQIGTTPG---WGGKTFIVQGFGNVGLHTTRYLTRAGATCIGVIEHDGTLY--NPEGIDPKLLED 341
                .|.|   ..||...:.|.|||..:......:.||....:.:..|.|.  ..||:.|:.:.:
pombe   211 ----RTKGAETLKGKRVAISGSGNVAQYAALKCIQEGAIVKSISDSKGVLIAKTAEGLVPEEIHE 271

  Fly   342 YK----------------NEHGTIVGYQNAKPYE--GENLMFEKCDIFIPAAVEKVITSENANRI 388
            ..                .:|..|.|   |:|:.  ||      .||.:|.|.:..::.|.|..:
pombe   272 IMALKEKRASIADSASLCKKHHYIAG---ARPWTNVGE------IDIALPCATQNEVSGEEAAAL 327

  Fly   389 ---QAKIIAEAAN-GPTTPAADKILIDR----NILVIPDLYINAGGVTVSFFEWLKN 437
               ..:.:||.:| |.:..|.:.....|    ...:.|....|||||.||..|..:|
pombe   328 IKQGCRYVAEGSNMGSSAEAVEVFEKSRASGEGCWLAPGKAANAGGVAVSGLEMAQN 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GdhNP_524470.4 GdhA 98..560 CDD:223411 103/372 (28%)
ELFV_dehydrog_N 104..233 CDD:280903 45/129 (35%)
NAD_bind_1_Glu_DH 254..552 CDD:133445 53/215 (25%)
gdh1NP_588184.1 PRK09414 4..448 CDD:181834 106/382 (28%)
ELFV_dehydrog_N 42..170 CDD:280903 45/130 (35%)
NAD_bind_2_Glu_DH 180..449 CDD:133455 56/222 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 75 1.000 Domainoid score I2482
eggNOG 1 0.900 - - E1_COG0334
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 113 1.000 Inparanoid score I1551
OMA 1 1.010 - - QHG54967
OrthoFinder 1 1.000 - - FOG0001473
OrthoInspector 1 1.000 - - otm47168
orthoMCL 1 0.900 - - OOG6_100455
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R306
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.760

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