DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS19b and AT5G15520

DIOPT Version :9

Sequence 1:NP_001262891.1 Gene:RpS19b / 42830 FlyBaseID:FBgn0039129 Length:155 Species:Drosophila melanogaster
Sequence 2:NP_197056.1 Gene:AT5G15520 / 831405 AraportID:AT5G15520 Length:143 Species:Arabidopsis thaliana


Alignment Length:139 Identity:68/139 - (48%)
Similarity:90/139 - (64%) Gaps:0/139 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASIMRHLYLR 67
            |.|||::..|...|..|:.||:||||.:|.....:|||:.||.||.|.||:|.|.||:.|.:|||
plant     4 GKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLR 68

  Fly    68 SPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGGRKLTPQGQRNLD 132
            ...|||||.::|.|.||||.||...|:||.|..|..||.||..::||....|||::|..|||:||
plant    69 GGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLD 133

  Fly   133 RIANKIVAK 141
            ::|.:|.|:
plant   134 QVAGRIAAE 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS19bNP_001262891.1 Ribosomal_S19e 5..138 CDD:279436 65/132 (49%)
AT5G15520NP_197056.1 Ribosomal_S19e 6..142 CDD:395866 66/135 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 154 1.000 Domainoid score I1350
eggNOG 1 0.900 - - E1_COG2238
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37416
Inparanoid 1 1.050 155 1.000 Inparanoid score I1675
OMA 1 1.010 - - QHG62169
OrthoDB 1 1.010 - - D1434984at2759
OrthoFinder 1 1.000 - - FOG0001026
OrthoInspector 1 1.000 - - mtm1074
orthoMCL 1 0.900 - - OOG6_100904
Panther 1 1.100 - - O PTHR11710
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X617
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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