DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS19b and Rps19l2

DIOPT Version :9

Sequence 1:NP_001262891.1 Gene:RpS19b / 42830 FlyBaseID:FBgn0039129 Length:155 Species:Drosophila melanogaster
Sequence 2:NP_001032423.1 Gene:Rps19l2 / 29287 RGDID:68440 Length:145 Species:Rattus norvegicus


Alignment Length:144 Identity:85/144 - (59%)
Similarity:104/144 - (72%) Gaps:0/144 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASIMRHLY 65
            |||||||:::|....:.:|||||||||:.|||....:|..|.||.||.|::|||||.||..||||
  Rat     1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLY 65

  Fly    66 LRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGGRKLTPQGQRN 130
            ||..||||:.||:|.||:|||||||...|.|....|:.|||||...|||:..||||||||||||:
  Rat    66 LRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRD 130

  Fly   131 LDRIANKIVAKQRE 144
            |||||.::.|..::
  Rat   131 LDRIAGQVAAANKK 144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS19bNP_001262891.1 Ribosomal_S19e 5..138 CDD:279436 80/132 (61%)
Rps19l2NP_001032423.1 Ribosomal_S19e 5..141 CDD:395866 80/135 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343080
Domainoid 1 1.000 178 1.000 Domainoid score I3457
eggNOG 1 0.900 - - E1_COG2238
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37416
Inparanoid 1 1.050 187 1.000 Inparanoid score I3820
OMA 1 1.010 - - QHG62169
OrthoDB 1 1.010 - - D1434984at2759
OrthoFinder 1 1.000 - - FOG0001026
OrthoInspector 1 1.000 - - mtm9051
orthoMCL 1 0.900 - - OOG6_100904
Panther 1 1.100 - - O PTHR11710
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X617
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.810

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