DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt2 and AT1G53780

DIOPT Version :9

Sequence 1:NP_001287493.1 Gene:Rpt2 / 42828 FlyBaseID:FBgn0015282 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001185217.1 Gene:AT1G53780 / 841815 AraportID:AT1G53780 Length:620 Species:Arabidopsis thaliana


Alignment Length:362 Identity:162/362 - (44%)
Similarity:231/362 - (63%) Gaps:15/362 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 NQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEII----DDNHAIVSTSVGSEHYVSILSFVDK 140
            ||..|....:..:||:         |:.|....:||    :|...:|......::.|.:......
plant   262 NQWDLVSDKQMMQEEQ---------PLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASP 317

  Fly   141 DQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLT 205
            ..:|.|..|.::.|.:.:...|....||.||:|.:|:.|..||:||||...||::|:|.||||:.
plant   318 TDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPML 382

  Fly   206 HPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELF 270
            |||.:..:||.|||||:.|||||:||||:|:||||:|.|.|:|||||||:|||:|:|.::|||||
plant   383 HPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELF 447

  Fly   271 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 335
            ::|......|:|.|||||:|..|:|...|.:.|:||||||:|.||||||:||::||:|||||.:.
plant   448 QMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDI 512

  Fly   336 LDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTE 400
            |||||:||||:|||:||.|||.:.:.:||.|||..|:...|:....|.....:.:||||:::|.|
plant   513 LDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIE 577

  Fly   401 AGLMALRERRMKVTNEDFKKSKESVL--YRKKEGTPE 435
            ||:.|:..||..||.:||..:...|:  |:|...||:
plant   578 AGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPK 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt2NP_001287493.1 PTZ00361 1..439 CDD:185575 162/362 (45%)
AT1G53780NP_001185217.1 cyclophilin <4..95 CDD:294131
RPT1 228..616 CDD:224143 162/362 (45%)
AAA 398..531 CDD:278434 84/132 (64%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D571919at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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