DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt2 and Rpt1

DIOPT Version :9

Sequence 1:NP_001287493.1 Gene:Rpt2 / 42828 FlyBaseID:FBgn0015282 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster


Alignment Length:439 Identity:171/439 - (38%)
Similarity:257/439 - (58%) Gaps:44/439 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 IPTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNE 92
            :|..:|..:|:.|..:...|  ::.......::|||......|          .:.:|..:|..:
  Fly     1 MPDYLGDDQRKVKHDEKEDK--EIKSLDEGDIELLKTYGQSQY----------HKSIKSIEEDIQ 53

  Fly    93 EERSKVDDLRG--------------------------TPMSVGNLEEII----DDNHAIVSTSVG 127
            :...:|::|.|                          .|:.|....:||    ||...|::....
  Fly    54 KAVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQF 118

  Fly   128 SEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQ 192
            ::..|.:...|....:|.|..|.::...:.:...|....||.||:|::|..|..||:|:||...|
  Fly   119 AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQ 183

  Fly   193 IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK 257
            |::::|.||.||.|||.:..:||:|||||:|:|||||||||.|:||||:|.|.|:||:||||:||
  Fly   184 IEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 248

  Fly   258 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 322
            |:|:|.::|||||.:|......::|.|||||:|..|:|..:||:.|:|||||||:|||||||.||
  Fly   249 YVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313

  Fly   323 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKD 387
            ::||:|||||.:||||||:||||:|||:||.|||:..:..||.||...|::..|:....|.....
  Fly   314 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCP 378

  Fly   388 DLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL--YRKKEGTP 434
            :.:||:|:::|||||:.|:|.||...|.:||.::.:.|:  |.|...||
  Fly   379 NSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIKSYAKFSATP 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt2NP_001287493.1 PTZ00361 1..439 CDD:185575 171/439 (39%)
Rpt1NP_477473.1 RPT1 27..430 CDD:224143 166/411 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445436
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0554
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23073
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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